Gene Information

Name : SDY_1021 (SDY_1021)
Accession : YP_402677.1
Strain : Shigella dysenteriae Sd197
Genome accession: NC_007606
Putative virulence/resistance : Unknown
Product : iso-IS1 ORF2
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG1662
EC number : -
Position : 963197 - 963592 bp
Length : 396 bp
Strand : -
Note : Code: L; COG: COG1662

DNA sequence :
GTGGCGCTTATCTGCGAACTTGATGAGCAATGGAGTTTCGTTGGCAGTAAAGCCCGGCAACACTGGCTCTGGTACGCGTA
TAACACCAAAACAGGGGGGGGACTGGCCTACACTTTTGGTCCCCGTACCGATGAAACCTGCCGGGAACTACTGGCACTGC
TTACGCCATTCAACATCGGCATGATCACCAGCGACGACTGGGGCAGCTATGGCCGGGAGGTGCCGAAGGATAAGCATCTG
ACCGGAAAAATATTCACCCAACGGATTGAGCGCAATAACCTGACGCTGCGCACCCGCATTAAGCGCTTGGCTCGTAAAAC
AATCTGCTTCTCGCGTTCAGTAGAGAGCCACGAAAAAGTCATCGGGACGTTTATTGAAAAACACATGTTCTACTAA

Protein sequence :
MALICELDEQWSFVGSKARQHWLWYAYNTKTGGGLAYTFGPRTDETCRELLALLTPFNIGMITSDDWGSYGREVPKDKHL
TGKIFTQRIERNNLTLRTRIKRLARKTICFSRSVESHEKVIGTFIEKHMFY

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Z1123 NP_286658.1 hypothetical protein Not tested TAI Protein 2e-42 71
Z1562 NP_287066.1 hypothetical protein Not tested TAI Protein 2e-42 71
insB NP_458736.1 insertion element IS1 protein InsB Not tested SPI-7 Protein 3e-25 45
insB ADD91744.1 transposase Not tested PAI-I AL862 Protein 5e-25 45
EC042_4085 YP_006098368.1 transposase Not tested Tn2411 Protein 3e-25 45
EC042_4113 YP_006098397.1 transposase Not tested Tn2411 Protein 3e-25 45
InsB (Tn1) CAJ77072.1 Transposase Not tested AbaR1 Protein 4e-25 45
insB NP_709463.1 IS1 ORF2 Not tested SHI-2 Protein 1e-24 44
Z1192 NP_286727.1 IS1 protein InsB Not tested TAI Protein 9e-25 44
Z1632 NP_287135.1 IS1 protein InsB Not tested TAI Protein 9e-25 44
S4059 NP_839227.1 IS1 orfB Not tested SHI-2 Protein 1e-24 43
tnpH AAD44742.1 TnpH Not tested SHI-2 Protein 1e-24 43
insB NP_709451.1 IS1 ORF2 Not tested SHI-2 Protein 9e-25 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SDY_1021 YP_402677.1 iso-IS1 ORF2 VFG0612 Protein 3e-25 43