Gene Information

Name : SDY_1018 (SDY_1018)
Accession : YP_402674.1
Strain : Shigella dysenteriae Sd197
Genome accession: NC_007606
Putative virulence/resistance : Unknown
Product : IS600 ORF2
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 960581 - 961423 bp
Length : 843 bp
Strand : +
Note : Code: L; COG: COG2801

DNA sequence :
GTGGCACATATCCGCACTCGCGAAACATATGGAACCCGGCGGCTCCAGACGGAGCTGGCAGAGAATGGCATCATCGTTGG
TCGTGACCGACTGGCACGTCTTCGTAAGGAGCTAAGGCTACGCTGTAAGCAGAAACGCAAGTTCAGAGCGACTACGAACT
CGAACCACAATCTGCCAGTTGCGCCAAATCTGCTGAACCAGACGTTCGCTCCTACAGCACCAAATCAGGTCTGGGTGGCG
GACCTGACGTATGTTGCCACACAGGAGGGATGGTTGTACCTCGCTGGCATCAAAGATGTTTATACGTGCGAAATTGTCGG
CTACGCCATGGGAGAGCGCATGACAAAAGAGCTGACAGGTAAAGCCCTGTTTATGGCGCTCAGGAGCCAGCGCCCACCTG
CCGGGCTAATCCACCACTCTGATCGAGGTTCACAGTACTGCGCATACGATTACCGGGTCATACAGGAGCAGTTTGGTCTG
AAAACATCAATGTCGCGTAAAGGTAACTGTTACGACAACGCTCCGATGGAAAGCTTCTGGGGAACGCTGAAAAATGAGAG
CCTGAGCCACTATCGTTTTAATAACCGGGATGAAGCCATCTCAGTAATACGGGAATACATTGAGATTTTCTACAATCGTC
AGCGTCGTCACTCTCGTCTGGGGAATGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCC
GCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCT
GCAAGGTTCTTTGCTGCCGTTAACCCGTCTGGTTTGGGCATGA

Protein sequence :
MAHIRTRETYGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQKRKFRATTNSNHNLPVAPNLLNQTFAPTAPNQVWVA
DLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFMALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQFGL
KTSMSRKGNCYDNAPMESFWGTLKNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNGFAPIFPDICYHLTHYKP
AAADIPVASDNPAHYADAIRYNARTPLQGSLLPLTRLVWA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAB86997.1 hypothetical 31 KD protein Not tested SHI-1 Protein 3e-90 95
hp1 AAC61713.1 Hp1 Not tested PAI I CFT073 Protein 2e-90 95
c3575 NP_755450.1 transposase insF Not tested PAI I CFT073 Protein 3e-90 95
Z1134 NP_286669.1 hypothetical protein Not tested TAI Protein 7e-90 94
Z1573 NP_287077.1 hypothetical protein Not tested TAI Protein 7e-90 94
unnamed AAF09022.1 unknown Not tested SHI-O Protein 4e-90 94
unnamed AAF09030.1 unknown Not tested SHI-O Protein 4e-90 94
tnpI AAD44751.1 TnpI Not tested SHI-2 Protein 4e-90 94
unnamed AAQ07468.1 TnpI-like protein Not tested Not named Protein 1e-88 93
tnpA1133 ACK44540.1 TnpA Not tested SGI1 Protein 1e-38 46
orfB AGK07032.1 IS1133 transposase; OrfB Not tested SGI1 Protein 1e-38 46
orfB AGK07090.1 IS1133 transposase; OrfB Not tested SGI1 Protein 1e-38 46
insF CAC43414.1 transposase of insertion element IS3 Not tested PAI III 536 Protein 4e-35 44
unnamed AAL57581.1 transposase 1 Not tested LEE Protein 2e-35 43
ECO111_3732 YP_003236068.1 putative IS3 transposase InsF Not tested LEE Protein 3e-35 43
unnamed AAL57519.1 transposase 1 Not tested LEE Protein 2e-35 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SDY_1018 YP_402674.1 IS600 ORF2 VFG1706 Protein 1e-90 95
SDY_1018 YP_402674.1 IS600 ORF2 VFG1631 Protein 2e-35 44