Gene Information

Name : SDY_1014 (SDY_1014)
Accession : YP_402670.1
Strain : Shigella dysenteriae Sd197
Genome accession: NC_007606
Putative virulence/resistance : Virulence
Product : hypothetical protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 956295 - 956840 bp
Length : 546 bp
Strand : -
Note : orf

DNA sequence :
GTGATGAACGTGATGTTGCCAGCTCCCGACCTTTACTCCCTCTCATTTATTCACATTACAAGGATTTCATACATGAAAAC
ATTGTCTCAGAACACCACCTCTTCGGCTTGTGCACCGGAGACTGGCCTGCAACAACTGGTAGCCACCATAGTCCCTGATG
AACAGCGCATCAGCTTCTGGCCGCAGCATTTTGGCCTCATTCCACAGTGGGTGACCCTGGAGCCCCGTGTCTTCGGCTGG
ATGGACCGTCTGTGCGAAAACTACTGCGGTGGTATCTGGAATCTGTACACCCTGAACAACGGCGGGGCATTTATGGCCCC
TGAACCGGATGACGATGATGACGAAACATGGGTACTGTTCAATGCCATGAACGGTAACCGCGCTGAAATGAGCCCGGAAG
CTGCCGGTATTGCCGCATGTCTGATGACGTACAGTCATCATGCCTGTCGCACGGAGTGTTATGCCATGACGGTTCATTAT
TACCGTCTGCGGGACTACGCCCTGCAGCATCCGGAATGCAGCGCCATTATGCGCATCATTGACTGA

Protein sequence :
MMNVMLPAPDLYSLSFIHITRISYMKTLSQNTTSSACAPETGLQQLVATIVPDEQRISFWPQHFGLIPQWVTLEPRVFGW
MDRLCENYCGGIWNLYTLNNGGAFMAPEPDDDDDETWVLFNAMNGNRAEMSPEAAGIAACLMTYSHHACRTECYAMTVHY
YRLRDYALQHPECSAIMRIID

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAL67346.1 intergenic-region protein Not tested PAI II CFT073 Protein 5e-71 100
SF2995 NP_708769.2 hypothetical protein Not tested SHI-1 Protein 5e-70 99
unnamed CAI43899.1 hypothetical protein Not tested LEE Protein 1e-81 99
S3200 NP_838483.1 hypothetical protein Not tested SHI-1 Protein 5e-70 99
ECO103_3588 YP_003223445.1 hypothetical protein Not tested LEE Protein 8e-58 91
ORF_48 AAZ04457.1 conserved hypothetical protein Not tested PAI I APEC-O1 Protein 5e-59 89
yfjX YP_854322.1 hypothetical protein Not tested PAI I APEC-O1 Protein 8e-59 89
c5155 NP_757003.1 hypothetical protein Not tested PAI II CFT073 Protein 8e-59 89
Z1216 NP_286751.1 hypothetical protein Not tested TAI Protein 6e-59 88
Z1656 NP_287159.1 hypothetical protein Not tested TAI Protein 6e-59 88
unnamed CAI43844.1 hypothetical protein Not tested LEE Protein 1e-64 87
yfjX CAE85200.1 YfjX protein Not tested PAI V 536 Protein 2e-58 87
aec72 AAW51755.1 Aec72 Not tested AGI-3 Protein 1e-62 87
unnamed CAD66202.1 hypothetical protein Not tested PAI III 536 Protein 3e-63 87
yfjX ADD91703.1 YfjX Not tested PAI-I AL862 Protein 7e-64 87
unnamed CAD42097.1 hypothetical protein Not tested PAI II 536 Protein 3e-62 86
z1216 CAD33786.1 Z1216 protein Not tested PAI I 536 Protein 1e-63 84

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SDY_1014 YP_402670.1 hypothetical protein VFG0659 Protein 1e-70 99
SDY_1014 YP_402670.1 hypothetical protein VFG1677 Protein 1e-63 87
SDY_1014 YP_402670.1 hypothetical protein VFG1616 Protein 1e-62 86
SDY_1014 YP_402670.1 hypothetical protein VFG1527 Protein 5e-64 84