Gene Information

Name : SDY_1007 (SDY_1007)
Accession : YP_402663.1
Strain : Shigella dysenteriae Sd197
Genome accession: NC_007606
Putative virulence/resistance : Virulence
Product : hypothetical protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 953329 - 953526 bp
Length : 198 bp
Strand : -
Note : orf

DNA sequence :
ATGAAATCATTAACCACGGAAACCGCACTGGATATTCTGATTGCGTGGCTGCTGGACAATATCGACTGCGAATCGGGAAT
TATCTTTGACAACGATGAGGATAAAACAGATTCGGCAGCACTGTTGCCCTGTATCGAACAGGCCAGGGAGGGTATCCGTA
CCCTGTGCCAACTGCAGCTTCTGCACCAGAACCGATGA

Protein sequence :
MKSLTTETALDILIAWLLDNIDCESGIIFDNDEDKTDSAALLPCIEQAREGIRTLCQLQLLHQNR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ECO103_3594 YP_003223451.1 hypothetical protein Not tested LEE Protein 7e-20 93
ECO111_3780 YP_003236115.1 hypothetical protein Not tested LEE Protein 4e-21 93
unnamed ADD91697.1 hypothetical conserved protein Not tested PAI-I AL862 Protein 5e-21 93
unnamed CAI43850.1 hypothetical protein Not tested LEE Protein 5e-21 93
unnamed AAK00484.1 unknown Not tested SHI-1 Protein 6e-20 91
SF3001 NP_708775.1 hypothetical protein Not tested SHI-1 Protein 9e-20 91
Z1225 NP_286759.1 hypothetical protein Not tested TAI Protein 9e-21 91
unnamed AAL08480.1 unknown Not tested SRL Protein 6e-21 91
unnamed CAE85206.1 hypothetical protein Not tested PAI V 536 Protein 3e-21 91
unnamed CAD66209.1 hypothetical protein Not tested PAI III 536 Protein 1e-20 91
z1225 CAD33791.1 Z1225 protein Not tested PAI I 536 Protein 1e-20 91
Z1663 NP_287165.1 hypothetical protein Not tested TAI Protein 4e-21 91
c5147 NP_756995.1 hypothetical protein Not tested PAI II CFT073 Protein 1e-20 90
unnamed AAL67387.1 L0009-like protein Not tested PAI II CFT073 Protein 1e-20 90
unnamed CAD42103.1 hypothetical protein Not tested PAI II 536 Protein 1e-20 90
unnamed AAC31488.1 L0009 Not tested LEE Protein 2e-15 86
Z5093 NP_290244.1 hypothetical protein Not tested LEE Protein 3e-15 86
unnamed ACU09435.1 conserved hypothetical protein Not tested LEE Protein 2e-15 86
ECs4541 NP_312568.1 hypothetical protein Not tested LEE Protein 3e-15 86

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SDY_1007 YP_402663.1 hypothetical protein VFG1071 Protein 3e-21 91
SDY_1007 YP_402663.1 hypothetical protein VFG0665 Protein 2e-20 91
SDY_1007 YP_402663.1 hypothetical protein VFG1532 Protein 5e-21 91
SDY_1007 YP_402663.1 hypothetical protein VFG1684 Protein 5e-21 91
SDY_1007 YP_402663.1 hypothetical protein VFG1622 Protein 4e-21 90
SDY_1007 YP_402663.1 hypothetical protein VFG0788 Protein 8e-16 86