|
Name : smpB (Synpcc7942_1795) Accession : YP_400812.1 Strain : Synechococcus elongatus PCC 7942 Genome accession: NC_007604 Putative virulence/resistance : Unknown Product : SsrA-binding protein Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0691 EC number : - Position : 1865979 - 1866443 bp Length : 465 bp Strand : - Note : binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Ca DNA sequence : ATGGCCGATTCCGGCGGCATCAAAGTTCTGAGCGAGAATCGTCAGGCTCGTTTCCAATACGAAATTCTCGAAACCTTCGA GACTGGGATTGAACTTCTCGGCACGGAGGTCAAATCGATTCGGGCCGGAAAGGTTAACCTGCGCGATGGCTTTGCTTTGG TGCGCAACGGCGAGGTTTGGTTGCACAACATCCATATTTCGCCGCACCAGCAGGCGAGTGCCTACTACAATCACGACCCG CTGCGGACGCGCAAGCTGCTGATGCACCGTGAGGAAATTCGCAAACTGATCGGTAAGGTCGAGCAAAAGGGGCTGACCTT AGTGCCGCTGAAGATGTATCTGAAGCAGGGCTGGGTGAAAGTCACCCTCGGCTTGGGACGCGGTAAGAAACTGCACGACA AGCGTGAAACCGAGCGTCGCCGCCAAGATCAACGGGATATTCAGCGGGCAATCAAGCGCGCTTAG Protein sequence : MADSGGIKVLSENRQARFQYEILETFETGIELLGTEVKSIRAGKVNLRDGFALVRNGEVWLHNIHISPHQQASAYYNHDP LRTRKLLMHREEIRKLIGKVEQKGLTLVPLKMYLKQGWVKVTLGLGRGKKLHDKRETERRRQDQRDIQRAIKRA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | AET14351.1 | SsrA-binding protein | Not tested | SaPI68111 | Protein | 1e-28 | 55 |
| smpB | YP_001800894.1 | SsrA-binding protein | Not tested | Not named | Protein | 2e-26 | 49 |
