Gene Information

Name : Synpcc7942_1404 (Synpcc7942_1404)
Accession : YP_400421.1
Strain : Synechococcus elongatus PCC 7942
Genome accession: NC_007604
Putative virulence/resistance : Virulence
Product : two component transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 1455395 - 1456084 bp
Length : 690 bp
Strand : -
Note : -

DNA sequence : 
ATGCGAATTCTGCTCGTTGACGACGAAGAAGCCCTGACTGCGCCACTCCATCGCATGTTGCGCCGCGAAGGCTACGACGT
GGATGTGGCGAGTGATGGTCAGACGGGAGAACAGCTGGCAACCCACCAGCCCTACGACTTGCTGATTCTTGATTGGATGC
TGCCCGAGCGATCGGGGTTGGATCTCTGTCGCTCCGTTCGACAGCGCGATCGCCAAGTACCAGTTCTGTTTCTGACTGCT
CGCGATACAGTCGATGACCGAGTTCAGGGCTTAGATGCCGGAGCTGACGACTACTTGGTTAAACCCTTCGAACTGAAGGA
ACTCCTAGCCCGCGTCCGAGCCTTGCTCCGGCGATCGCCCCGACAGGAAACCTCGGAGGCTCCGCGCCTTGCGGGTGGCG
ATCTGGAACTGGATACGCCCAACCAACTGGCCTATCGTCAGGGCCGTCGCATTGAGCTGTCCGAAAAAGAGACGCAGTTG
CTGGCAGTACTCATGCAGCATCCGGGCCAACTGGTCAGCCACCAAGAGCTGCAAGCGCAAGTCTGGGGTTCTGCCAATCC
CCCCAGTAGCAATGTTCTGGCCGCACAAATTCGCCTCCTGCGCCGCAAGCTGGAAGCCCCGGGCGAAACGCCGCTGATCT
TTAGCGTCTATGGCAAAGGTTACCGCTTCCAATTCGGAGATTTGGCCTAA

Protein sequence : 
MRILLVDDEEALTAPLHRMLRREGYDVDVASDGQTGEQLATHQPYDLLILDWMLPERSGLDLCRSVRQRDRQVPVLFLTA
RDTVDDRVQGLDAGADDYLVKPFELKELLARVRALLRRSPRQETSEAPRLAGGDLELDTPNQLAYRQGRRIELSEKETQL
LAVLMQHPGQLVSHQELQAQVWGSANPPSSNVLAAQIRLLRRKLEAPGETPLIFSVYGKGYRFQFGDLA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 6e-33 44
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 4e-32 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Synpcc7942_1404 YP_400421.1 two component transcriptional regulator BAC0083 Protein 2e-32 44
Synpcc7942_1404 YP_400421.1 two component transcriptional regulator BAC0197 Protein 2e-29 44
Synpcc7942_1404 YP_400421.1 two component transcriptional regulator BAC0288 Protein 6e-31 43
Synpcc7942_1404 YP_400421.1 two component transcriptional regulator BAC0125 Protein 1e-33 43
Synpcc7942_1404 YP_400421.1 two component transcriptional regulator CP000647.1.gene4257. Protein 2e-19 42
Synpcc7942_1404 YP_400421.1 two component transcriptional regulator BAC0533 Protein 2e-19 42
Synpcc7942_1404 YP_400421.1 two component transcriptional regulator BAC0638 Protein 4e-27 42
Synpcc7942_1404 YP_400421.1 two component transcriptional regulator HE999704.1.gene1528. Protein 1e-30 41
Synpcc7942_1404 YP_400421.1 two component transcriptional regulator CP001138.1.gene4273. Protein 1e-19 41
Synpcc7942_1404 YP_400421.1 two component transcriptional regulator CP004022.1.gene3215. Protein 4e-22 41
Synpcc7942_1404 YP_400421.1 two component transcriptional regulator BAC0487 Protein 7e-23 41
Synpcc7942_1404 YP_400421.1 two component transcriptional regulator CP001918.1.gene5135. Protein 8e-15 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Synpcc7942_1404 YP_400421.1 two component transcriptional regulator VFG1390 Protein 8e-34 45
Synpcc7942_1404 YP_400421.1 two component transcriptional regulator VFG0596 Protein 2e-33 44
Synpcc7942_1404 YP_400421.1 two component transcriptional regulator VFG1389 Protein 7e-27 44
Synpcc7942_1404 YP_400421.1 two component transcriptional regulator VFG0473 Protein 4e-26 41