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Name : pdp (LSA0801) Accession : YP_395414.1 Strain : Lactobacillus sakei 23K Genome accession: NC_007576 Putative virulence/resistance : Unknown Product : pyrimidine-nucleoside phosphorylase Function : - COG functional category : F : Nucleotide transport and metabolism COG ID : COG0213 EC number : 2.4.2.2 Position : 792975 - 794273 bp Length : 1299 bp Strand : + Note : - DNA sequence : ATGAGAATGGTTGATATCATTGATCATAAGCGACAAGGTGGCGCCCTAACGGCAGAAGAAATCCAATTCTTTATTGATGG GTATACAGATGGGACGATTCCAGACTACCAAGCAAGTGCGTTACTAATGGCGATTTATTTTAATGACATGACTGATGACG AACGGGCGTTGTTGACCATGACGATGATGCGTTCGGGCGACCAATTAGATCTTTCAATGATTGATGGCATCAAAGTTGAT AAGCATTCAACTGGTGGTGTCGGTGATAAGACCAGTATTCCACTTGCACCAATGATTGCAGCGTTAGGGATTCCAATTCC GATGATTTCAGGGCGTGGTTTAGGCCATACTGGTGGCACATTGGATAAATTGGAAGCGATTCCAAATTTTAACATTTCAT TAACAGAAGAGGCTTTTAAAAAGCAAGTGGCAGAGATTAAACTTGCGATTATTGGGGCAACCGGTAATATTGCCCCCGCT GACAAGAAAATTTATGCACTCAGAGATGTGACTGATACGGTTGATTCGATTCCGTTAATTGCAGGGTCAATCATGAGTAA GAAGATTGCTTCAGGCACCGATGCGTTAGTATTGGACGTTAAGACTGGTTCCGGAGCCTTTATGAAGACTGAAGAAGATG CTAAGGAATTGGCACAAGCCCTCGTTAACATTGGGCGTAGTGTGGGGATGCAATGTATGGCCGTTATTTCTGATATGAAT CAACCTTTGGGCAATGCGATTGGGAATGCGCTAGAAATCGAAGAATCAATCGCCATCTTAAAAGGAGAAGGACCAGCCGA TATTACAGAACTAATCTTAACGTTAGGCAGTCAAATGGTTGTCTTGGCTGGAAAGGCAAGTACCTTGGATGAAGCGCGTC AATTACTACAAGGCGTGATCGACGATGGTCGAGCACTCGAAGCCTTTCGCCAAATGATTATTTATCAAGGTGGTGATCCT GCCGTTATTGAAAATCCAAAATTAATGCCACAAGCACAATATCAAATCGAATTACCTGCTAAAGAAAACGGTTATGTGAC TGAAATGACCGCTAATGAAATGGGGATTGCCAGCATGTTACTTGGTGGTGGTCGACAAGCGAAAACCGATGAGATTGATT ATGCTGTCGGATTAGTCTTACACAAAAAAATCGGAGACCCCGTTCAAAAAGGTGAGAGTCTATTGACGATTTATAGTAAC CGAGAAGACATTGAAGCCATTAAGGACTTGCTCTACGATAATATTAAAATTGGTCCAAAAGCGCAAAAGGTCACTTTGAT TCATGCGTTAATTCAATAG Protein sequence : MRMVDIIDHKRQGGALTAEEIQFFIDGYTDGTIPDYQASALLMAIYFNDMTDDERALLTMTMMRSGDQLDLSMIDGIKVD KHSTGGVGDKTSIPLAPMIAALGIPIPMISGRGLGHTGGTLDKLEAIPNFNISLTEEAFKKQVAEIKLAIIGATGNIAPA DKKIYALRDVTDTVDSIPLIAGSIMSKKIASGTDALVLDVKTGSGAFMKTEEDAKELAQALVNIGRSVGMQCMAVISDMN QPLGNAIGNALEIEESIAILKGEGPADITELILTLGSQMVVLAGKASTLDEARQLLQGVIDDGRALEAFRQMIIYQGGDP AVIENPKLMPQAQYQIELPAKENGYVTEMTANEMGIASMLLGGGRQAKTDEIDYAVGLVLHKKIGDPVQKGESLLTIYSN REDIEAIKDLLYDNIKIGPKAQKVTLIHALIQ |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| deoA | YP_005163381.1 | Thymidine phosphorylase | Not tested | Not named | Protein | 6e-86 | 47 |
