Gene Information

Name : LSA0400 (LSA0400)
Accession : YP_395013.1
Strain : Lactobacillus sakei 23K
Genome accession: NC_007576
Putative virulence/resistance : Virulence
Product : Iron(III)-compound ABC transporter ATP-binding subunit
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1120
EC number : -
Position : 409459 - 410262 bp
Length : 804 bp
Strand : +
Note : -

DNA sequence :
ATGGCAATTTTAGAAACACAACAGGTTAGTGTCGGTTATAATCGACGCTTAATTATTCAGGATTTATCAATTCAAATTCC
TCAAGGGCAGATTACAACCTTGATCGGACCTAACGGGAGTGGTAAGTCAACTTTGATACGGACGTTAGCCCATTTGTTGA
AACCGTCTTCAGGGACGGTTCTGCTGGCAGATCAGGCGCTAGCGACTAAGACGCCTAAAGAGATGGCCCAAGAAATGGCG
TTATTACCGCAAGTTGGGGAATTAACGACCGATTTGTCTGTCTTTGATTTAGTATCGTTTGGACGGCTGCCTTACCGGCA
ACAATTTAGACCCTTGTCAGCGGTCGATAAAGAAAAAATTGAGTGGGCAATTGAACGAACGGGGCTTAATCAATTTAGAG
ACCGTTTCTTGAGTACCTTGTCAGGCGGGCAACGCCAACGTGCTTGGATTGCGATGGCTTTGGCGCAAGACACAGATATT
TTAATATTGGATGAACCAACCACTTATTTAGATTTGACCCACCAACTAGAAATTATGTTATTAATTCAGGAATTAAATCA
GATTGAAGACCGCACCATTATCATGGCGTTGCATGATTTAAACCATGCGGCCCGTTTTTCAGATCAGTTGATTGCCTTAA
AGAATGGTCAATTACAGGCCAGTGGGACAGTCAATGAGGTCATGACGCGTGATAATTTACGACACATCTTTAATATTGAT
GCGACGTTAATCGAACATGATCAGCGTCCCTTAATCCTAACTTATGATCGCTGGTCAGAAGGGGAACAGGATCATGATGA
ATAA

Protein sequence :
MAILETQQVSVGYNRRLIIQDLSIQIPQGQITTLIGPNGSGKSTLIRTLAHLLKPSSGTVLLADQALATKTPKEMAQEMA
LLPQVGELTTDLSVFDLVSFGRLPYRQQFRPLSAVDKEKIEWAIERTGLNQFRDRFLSTLSGGQRQRAWIAMALAQDTDI
LILDEPTTYLDLTHQLEIMLLIQELNQIEDRTIIMALHDLNHAARFSDQLIALKNGQLQASGTVNEVMTRDNLRHIFNID
ATLIEHDQRPLILTYDRWSEGEQDHDE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
iusE YP_005143742.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 7e-49 45
DIP0585 NP_938961.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 2e-49 44
fecE AAL08451.1 ATP-binding protein FecE Virulence SRL Protein 6e-46 43
SPN23F_09560 YP_002510939.1 ferric siderophore ABC transporter ATP-binding protein Virulence PPI-1 Protein 2e-51 42
SP_1035 NP_345510.1 iron-compound ABC transporter ATP-binding protein Not tested PPI-1 Protein 2e-51 42
ciuD YP_005683346.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 2e-49 42
ciuD YP_003783391.1 iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 2e-49 42
ciuD YP_005685432.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 2e-49 42
ciuD YP_005681255.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 2e-49 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
LSA0400 YP_395013.1 Iron(III)-compound ABC transporter ATP-binding subunit BAC0164 Protein 4e-46 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
LSA0400 YP_395013.1 Iron(III)-compound ABC transporter ATP-binding subunit VFG1042 Protein 3e-46 43