Gene Information

Name : LSA1870 (LSA1870)
Accession : YP_396481.1
Strain : Lactobacillus sakei 23K
Genome accession: NC_007576
Putative virulence/resistance : Unknown
Product : glycine betaine/carnitine/choline ABC transporter ATP-binding subunit
Function : -
COG functional category : E : Amino acid transport and metabolism
COG ID : COG1125
EC number : -
Position : 1855662 - 1856600 bp
Length : 939 bp
Strand : -
Note : -

DNA sequence : 
ATGATTGAATTTGAAGGTGTCACCAAACAATACGGGCAAAGCCGCGCGTTAGATGGTCTAACATTAACCATTCCAGACAA
TGGTCTATTTGTCTTGGTCGGCCCTAGTGGTAGCGGGAAAACGACCTCGGTCAAAATGATCAACCGGTTGATTGAACCAA
CTAGTGGGACGATTAAAATTGATGGTCAACCAATTGACCAAATGGATTTGCAGACCCTCCGACTTAACATTGGCTATGTT
TTGCAAAATATCGCCCTTTTTCCGCATTTAACAATCGAAGAAAATATTACTATTCAACTTGAAGTTTTGGAGTGGTCTAA
AGCTGATCGCCAAAAGCGCGCTCGGGAGCTGTTAACGCTGGTTAATCTGGATCCAGATAAATACGCCAACCGCTATCCTA
GTGAACTCTCTGGGGGCCAACAACAGCGAATTGGGATTATTCGGGCGCTGGCGACCAAACCGAAAGTGATTTTAATGGAT
GAACCGTTTAGTGCGCTCGACCCTGTGACGCGCACGCAATTGCAAGATCTCGTATTGGATCTGCAAAAGCAATTGCATAA
TACGGTTGTTTTTGTGACCCATGACATGAAAGAAGCACTGCGTTTAGGGGATGAAATTGCGGTGATGCGGGCGGGTAGTA
TTCAACAAATTGGAACGGCCGAAGCGATTTTTAACCAACCGAAAAACGACTTTGTCCGTGAATTTTTCGATATTGAACGC
CAACCAACGACATTGACGGTGCAAGATTTAGTGGCCGCTGATTTGGGGACCGTTGTTAGCGGGCAACCGGAAACGATTAC
CATGACAGCATCCATCAAGGCCTTGGCCCAAGACTTAATCGCGCAACCTGAAGGGGTCATCGTGGCACTTGATGACCAAA
CACAACGGCAATTGACGACGACTGATTTAACGACGCTCATTGCGAAACGGGGGCTTTAA

Protein sequence : 
MIEFEGVTKQYGQSRALDGLTLTIPDNGLFVLVGPSGSGKTTSVKMINRLIEPTSGTIKIDGQPIDQMDLQTLRLNIGYV
LQNIALFPHLTIEENITIQLEVLEWSKADRQKRARELLTLVNLDPDKYANRYPSELSGGQQQRIGIIRALATKPKVILMD
EPFSALDPVTRTQLQDLVLDLQKQLHNTVVFVTHDMKEALRLGDEIAVMRAGSIQQIGTAEAIFNQPKNDFVREFFDIER
QPTTLTVQDLVAADLGTVVSGQPETITMTASIKALAQDLIAQPEGVIVALDDQTQRQLTTTDLTTLIAKRGL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
opuBA YP_005124363.1 choline transport system ATP-binding protein Not tested Not named Protein 7e-48 48
opuBA NP_938494.1 choline transport system ATP-binding protein Not tested Not named Protein 1e-48 48