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Name : clpC (LSA1779) Accession : YP_396392.1 Strain : Lactobacillus sakei 23K Genome accession: NC_007576 Putative virulence/resistance : Virulence Product : ATPase/chaperone ClpC, specificity factor for ClpP protease Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 1755046 - 1757514 bp Length : 2469 bp Strand : - Note : - DNA sequence : ATGAATAATCTATTTACACCAAGTGCCAAAAACGTTTTAATGTTAGCGCAAGAACAAGCTAAGAAGTTTAATCATCATGC ATTAGGGACGGAACATCTGTTATTAGCGCTCGTCCTCGAAAGCGAAGGGATTGCTGGGAACGCACTACGTGAACTCGGTG TGACACCCACTGATGTCTTGGAAGAAATTGAACGCTTAACCGGTTATGGTGATTCAATCGTTGCCATGGGTGTGGGCGGC TATTTGCCATACTCACCTAAAGCCAAACAAGTGCTGGATTTAGCGCGCGTTGAATCACAACAAGCTAACTCAGTCAAAAT CGGGACGGCACACCTATTATTAGCGTTATTACGCGATGATGACATTATTGCGGCCCGTATTCTATTAAACTTAGGCCTCA GTTTAGCCAAAACACGTCAATTATTACTCCAAAAGATGGGGATTGATGCTGCAACTGCTAAGAAACGCGCTAAAGCCAGT GCTAAAAAGGTTGATCAAGAAGGCACGCCTACTTTGAATCAATTGGCACGCGATTTAACCCAAATGGCCCGCGAAAATCA AATTGATCCAGTCGTTGGTCGTGATTCAGAAGTTAAACGACTCGTGCAAATCTTAGCGCGTCGTTCTAAAAATAATCCAG TTTTAATTGGCGAACCCGGTGTCGGTAAAACAGCGATTGCTGAAGGCTTTGCCCAACGGATTATCAACGGCGATGTGCCA AGCGATATGCAACAAAAACGGTTAATGATGCTTGATATGGGCTCATTAGTCGCTGGCACTAAGTATCGTGGGGAATTTGA AGATCGTCTCAAGAAGATTATTGAAGAAATCCATGAAGATGGCCAAGTAATCCTCTTTATCGATGAATTGCATACCTTAA TCGGTGCTGGTGGGGCAGAAGGCGCAATTGATGCCTCAAACATCTTGAAACCCGCCCTCGCCCGTGGCGAATTGCAATTA ATCGGTGCAACAACACTTGATGAATACCAAAAATACATCGAAAAAGATGCAGCTCTAGAACGGCGCTTCGCAACGGTGAC GGTTGATGAACCAACACCAGAAGATGCGGAACAAATCTTACGCGGGTTACGACCACGTTATGAAGAACATCATGGCATCA CAATTTCTGATGAAGCATTACACGAAGCCGTTGTTTTAGCGAACCGTTATATCACAAACCGTTTCTTACCTGATAAGGCA ATTGATTTGATGGATGAGGCGGCTGCAAAGGTCAGATTAGATGCTGTTAACCAAAAATCACCAATCGATCGCTTAGAAAC TGAATTGCAATCGTTGGCGAAAGAAAAAGAAGTCGCAGTTGGTGCACAAGACTTTGAAAAAGCCGCTGCCATTCACGAAA AAGAAATTATTGCTAAGGCTAAAATGGCTAAGCGCCAAGCAGCCGAACAAGAAAATGGTGTCCGGACAGATATTCAAGTC CAACCAGAAGATATCGCACAAGTCGTTGCCCAATGGACGGGTGTGCCAGTCACTCAATTGCAACGTAAAGAAAGCGAACG CTTGTTGCAACTTGAAAAAGTCTTGCATGAACGTGTTGTTGGCCAAGAAGAAGCGATTTCAGCTGTGGCCCGTGCAATTC GTCGGGCCCGCAGTGGTTTGAAGGATCCTAAGCGCCCAATCGGTTCATTTATGTTCTTAGGCCCTACTGGGGTTGGGAAG ACCGAATTGGCCAAAGCATTGGCAGAAGCCATGTTTGGTTCTGAAGACAACTTGATTCGGGTTGATATGTCAGAATACAT GGAACGTTACAGTACGAGTCGTTTAGTCGGGGCAGCACCTGGTTACGTCGGTTATGACGAAGGTGGCCAATTAACTGAAA AAGTCCGCAATAAACCTTATTCCGTTGTTCTTTTTGATGAAGTTGAAAAGGCTCATCCAGACGTCTTCAATATCCTGTTA CAAGTCTTAGATGATGGTTATTTGACAGATTCTAAGGGTCGGAAGGTTGACTTCCGGAACACAATCATGATCATGACGTC TAACTTAGGGGCAACAGCCTTACGTGATGACAAGTCAGTTGGTTTTGGGGTCAAAGATGTCACTGCCGACTACAAAGCAA TGCAAGGTCGGATTTTGGAAGAATTGAAGAAGTTATTCCGCCCAGAATTCTTAAACCGAATCGACGAAACGGTGGTCTTC CATTCATTAACACAACCTGAATTGCGTGAAATCGTCAAGATTATGTCCAAAGGCATCTTAAACCGCTTAGCGGAACAAGG TGTCAAGATCAAGATGACTGCTGCAGCGATGGATGTTGTGGCTAAAGCCGGCTTTGATCCAGAATACGGTGCGCGCCCAA TTCGCCGTGCATTACAAACGCAAGTTGAAGATCGCTTGAGTGAAGCCTTATTAGCTGGTGAAATCACAACGGATACGCCA GTCACAATTGGGGCTACCAAAGGTGAAATTACCATTAATAGTAAAAAAGAAAAAACAACTGTTAAATAA Protein sequence : MNNLFTPSAKNVLMLAQEQAKKFNHHALGTEHLLLALVLESEGIAGNALRELGVTPTDVLEEIERLTGYGDSIVAMGVGG YLPYSPKAKQVLDLARVESQQANSVKIGTAHLLLALLRDDDIIAARILLNLGLSLAKTRQLLLQKMGIDAATAKKRAKAS AKKVDQEGTPTLNQLARDLTQMARENQIDPVVGRDSEVKRLVQILARRSKNNPVLIGEPGVGKTAIAEGFAQRIINGDVP SDMQQKRLMMLDMGSLVAGTKYRGEFEDRLKKIIEEIHEDGQVILFIDELHTLIGAGGAEGAIDASNILKPALARGELQL IGATTLDEYQKYIEKDAALERRFATVTVDEPTPEDAEQILRGLRPRYEEHHGITISDEALHEAVVLANRYITNRFLPDKA IDLMDEAAAKVRLDAVNQKSPIDRLETELQSLAKEKEVAVGAQDFEKAAAIHEKEIIAKAKMAKRQAAEQENGVRTDIQV QPEDIAQVVAQWTGVPVTQLQRKESERLLQLEKVLHERVVGQEEAISAVARAIRRARSGLKDPKRPIGSFMFLGPTGVGK TELAKALAEAMFGSEDNLIRVDMSEYMERYSTSRLVGAAPGYVGYDEGGQLTEKVRNKPYSVVLFDEVEKAHPDVFNILL QVLDDGYLTDSKGRKVDFRNTIMIMTSNLGATALRDDKSVGFGVKDVTADYKAMQGRILEELKKLFRPEFLNRIDETVVF HSLTQPELREIVKIMSKGILNRLAEQGVKIKMTAAAMDVVAKAGFDPEYGARPIRRALQTQVEDRLSEALLAGEITTDTP VTIGATKGEITINSKKEKTTVK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| clpC | YP_005163377.1 | ATP-dependent Clp protease ATP-binding subunit | Not tested | Not named | Protein | 2e-179 | 50 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpC | YP_396392.1 | ATPase/chaperone ClpC, specificity factor for ClpP protease | VFG0079 | Protein | 0.0 | 59 |
| clpC | YP_396392.1 | ATPase/chaperone ClpC, specificity factor for ClpP protease | VFG0080 | Protein | 1e-142 | 49 |
