|
Name : lysS (LSA1594) Accession : YP_396207.1 Strain : Lactobacillus sakei 23K Genome accession: NC_007576 Putative virulence/resistance : Virulence Product : lysyl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : 6.1.1.6 Position : 1577615 - 1579132 bp Length : 1518 bp Strand : - Note : class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA DNA sequence : TTGGCACAAAAAGATAATCAAAAAGAAATGAATGACCAACTTAAGGTCCGTCGCGAAAAAATGCAATTTTTAAAGGATGA AGGCATTGATCCTTTTGGGAGCCGTTTTGAACGGACGCATTTAGCAGCAGCGCTACACGAAGAATTTGAAGCAATTGAAA AAGACGACTTGGATGTTAAAAACCAAGAAGTCACAATTGCAGGACGAATGATGTCTAAACGGGGTAAAGGTAAAGTTGGT TTTGCCGATATCCGTGATCGTTCTGGTAAAATTCAAATTTATGTTCGTAAAGACGAAGTCGGTGAAGATAACTACAAAAT TTTCAAGAAAGCCGATTTAGGGGATCACTTAGGCATTACCGGTCAAATCATGAAAACTGATATGGGTGAGTTAACGGTTA AGGCAACTCATCTAACATTCTTGTCAAAGGCATTACGCCCATTACCTGATAAGTATCACGGTTTAACGAATGTCGAACAA ATTTATCGTCAACGTTATTTAGATTTGATTGCTAATCCTGAAAGTATGGATCGTTTCACGAAGCGGAGCAAGATTATTTC TGCTGTTCGTGAATATTTAGATACACATGACTTTACTGAAGTTGAAACACCTGTCTTGCATGGTCAAGCTGGTGGGGCTT CAGCACGGCCATTTATTACACATCACAATGCATTAGACATTAACCTCTATTTACGAATTGCGCTTGAATTACACTTGAAG CGACTAATCGTTGGTGGGATGGAACGGGTCTATGAAATTGGCCGTGTATTCCGGAATGAAGGTATTGATACCAAACATAA CCCTGAATTCACGATGTTAGAAACATACGCTGCATACTTTGATTACAAAGATGTCATGGATGAAACCGAAGGCATTATCC GTTTTGCAGCTCATAAAGTCTTGGGAACTGGTCAAATTTCATACCAAGGCCAAGCAATTGATTTAGATAGTGATTTTGCC CGTGTACACATGGTCGACGCTATTAAGGCTGAAACAGGTGTCGATTTCTGGCAACCAATGACAGTTGAATCTGCTCGTGA ATTAGCAGACCAACACCACGTTAAGTATGAAGAATACTGGCAAGTGGGTCATATCATTAACGCCTTCTTTGAAGAATTCG TTGAAGATACATTAGTACAACCAACATTCATTTATGGCCATCCAGTGGAAATTTCACCATTGGCTAAGAAGAATGCCGAA GACGATCGTTTTACAGATCGTTGGGAACTCTTCATGCATGGTAACGAATATGCAAATGCCTTTACTGAATTGAATGATCC AATCGATCAACGTGAACGTTTTGAAGCACAAGCTAAGGAACGTGAAAATGGTAATGATGAAGCTGAAGGTATCGATGAAG ATTATGTCGAAGCATTAGAATACGGGATGCCGCCTACAGGTGGACTCGGTATTGGGATTGACCGGCTTGTTATGTTATTA ACTGACGCTGCTTCGATCCGCGATGTCCTTTTATTCCCAACAATGCGTCCAGACAAGCAAGAAAATGAAGAAATTTAA Protein sequence : MAQKDNQKEMNDQLKVRREKMQFLKDEGIDPFGSRFERTHLAAALHEEFEAIEKDDLDVKNQEVTIAGRMMSKRGKGKVG FADIRDRSGKIQIYVRKDEVGEDNYKIFKKADLGDHLGITGQIMKTDMGELTVKATHLTFLSKALRPLPDKYHGLTNVEQ IYRQRYLDLIANPESMDRFTKRSKIISAVREYLDTHDFTEVETPVLHGQAGGASARPFITHHNALDINLYLRIALELHLK RLIVGGMERVYEIGRVFRNEGIDTKHNPEFTMLETYAAYFDYKDVMDETEGIIRFAAHKVLGTGQISYQGQAIDLDSDFA RVHMVDAIKAETGVDFWQPMTVESARELADQHHVKYEEYWQVGHIINAFFEEFVEDTLVQPTFIYGHPVEISPLAKKNAE DDRFTDRWELFMHGNEYANAFTELNDPIDQRERFEAQAKERENGNDEAEGIDEDYVEALEYGMPPTGGLGIGIDRLVMLL TDAASIRDVLLFPTMRPDKQENEEI |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 2e-109 | 48 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | YP_396207.1 | lysyl-tRNA synthetase | VFG1668 | Protein | 1e-109 | 48 |
