Gene Information

Name : LSA1215 (LSA1215)
Accession : YP_395827.1
Strain : Lactobacillus sakei 23K
Genome accession: NC_007576
Putative virulence/resistance : Virulence
Product : two component system, response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 1197788 - 1198528 bp
Length : 741 bp
Strand : -
Note : -

DNA sequence : 
ATGAAAATATTAATGGTTGAAGATAATAAGTCTGTCTCTGAAATGATGGGCATGTTCTTTCAAAAAGAAGCGTGGGATGC
CCACTTTGCGTATGATGGTAATGAAGCGGTTGAACAATTTAGTGTTGATCCTGATAGTTGGGATATTATTACGTTAGATT
TGAATTTACCAGGAATGGATGGGATGCAGGTCGCCCAAAAAATTCGGGAGCAATCTAAAGTGGTGCCGATTATTATGTTA
ACGGCTCGCGATTCAGAGAGTGATCAAGTCTTGGGGCTCGAATTGGGTGCGGATGATTATGTGACGAAACCTTTTAGCCC
AATTACATTGATCGCCCGGATTAAGGCGCTCCATCGCCGTGCTGAGTTAGTTGATGAACAAGTTGGCGCGGAAGACGCGC
AAGTTGAAGAAGTAGATAACTCCGATTATGATGTGCAAACAGATCACTTCAAGATGAGCTCTAAGACACGCGAAGCCTAT
TTAATGGACGAACCGATTTTAGATCTCACGCCCAAAGAATTTGATTTATTGAAAACTTTAGCGAAGAATCCACGCCAAGT
TTTCTCACGCGAACAGTTATTAGAACTTGTTTGGGATTACCAATATTTTGGTGATGAACGAACAGTCGATGCCCATATTA
AAAAACTCCGTCAAAAGATCGAAGAGGTTGGTCCCCAAGTGATCCAGACGGTCTGGGGTGTCGGCTACAAATTTGATGAT
TCAGCGGTCAATAAACACTAA

Protein sequence : 
MKILMVEDNKSVSEMMGMFFQKEAWDAHFAYDGNEAVEQFSVDPDSWDIITLDLNLPGMDGMQVAQKIREQSKVVPIIML
TARDSESDQVLGLELGADDYVTKPFSPITLIARIKALHRRAELVDEQVGAEDAQVEEVDNSDYDVQTDHFKMSSKTREAY
LMDEPILDLTPKEFDLLKTLAKNPRQVFSREQLLELVWDYQYFGDERTVDAHIKKLRQKIEEVGPQVIQTVWGVGYKFDD
SAVNKH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
c3565 NP_755440.1 response regulator Not tested PAI I CFT073 Protein 1e-39 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
LSA1215 YP_395827.1 two component system, response regulator NC_012469.1.7685629. Protein 6e-44 46
LSA1215 YP_395827.1 two component system, response regulator NC_003923.1003749.p0 Protein 8e-43 43
LSA1215 YP_395827.1 two component system, response regulator HE999704.1.gene2815. Protein 2e-42 43
LSA1215 YP_395827.1 two component system, response regulator NC_002952.2859905.p0 Protein 1e-42 42
LSA1215 YP_395827.1 two component system, response regulator NC_002951.3237708.p0 Protein 1e-42 42
LSA1215 YP_395827.1 two component system, response regulator NC_007622.3794472.p0 Protein 1e-42 42
LSA1215 YP_395827.1 two component system, response regulator NC_002758.1121668.p0 Protein 1e-42 42
LSA1215 YP_395827.1 two component system, response regulator NC_009641.5332272.p0 Protein 1e-42 42
LSA1215 YP_395827.1 two component system, response regulator NC_013450.8614421.p0 Protein 1e-42 42
LSA1215 YP_395827.1 two component system, response regulator NC_007793.3914279.p0 Protein 1e-42 42
LSA1215 YP_395827.1 two component system, response regulator NC_002745.1124361.p0 Protein 1e-42 42
LSA1215 YP_395827.1 two component system, response regulator NC_009782.5559369.p0 Protein 1e-42 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
LSA1215 YP_395827.1 two component system, response regulator VFG1702 Protein 5e-40 41