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Name : pdhD (LSA1082) Accession : YP_395692.1 Strain : Lactobacillus sakei 23K Genome accession: NC_007576 Putative virulence/resistance : Unknown Product : dihydrolipoamide dehydrogenase Function : - COG functional category : C : Energy production and conversion COG ID : COG1249 EC number : 1.8.1.4 Position : 1075805 - 1077211 bp Length : 1407 bp Strand : - Note : E3 component of pyruvate complex; catalyzes the oxidation of dihydrolipoamide to lipoamide DNA sequence : ATGGTTGTAGGTGATTTTGCAATTGAATTAGAAACTGTCGTTATTGGTTCTGGACCTGGGGGCTACGTTGCTGCCATTCG AGCAGCTGAAATGGGTCAAAAAGTAACGGTTATTGAACGTGAAAATATCGGTGGGATTTGTTTGAACGTCGGCTGTATCC CTTCTAAAGCGTTAATCTCTGCAGGTCATCGTTTGCAAGAAGCTAAGAATTCCGAAGTTTTCGGTGTTTCAACAACGGGT GCAACGCTTGATTTTGCAAAGACGCAAGACTGGAAACAACACCAAGTTGTCGAAAAATTAACGGGCGGCATTTCAATGTT GTTTAAAAAACACAAAATTGATGTCTTAGACGGTTCTGCCTTTTTAGTTGATGAACATAGCTTACGGGTCATTAAAGAAG AAAGTGCACAAACTTATAGTTTCAAGAACTTAATCATCGCAACTGGTAGTCGCCCAATTGAAATTAAGGGCTTCAAGTTC AACAAACGCGTGATTGATTCAACTGGTGGTTTAAACTTAACGGAAGTGCCTAAGGAATTAGTTGTGATTGGCGGGGGTTA CATCGGTTCTGAATTAGCAGGTGCTTACGCTAACTTGGGTGCCCACGTCACCATTCTTGAAGGAACGGATTCAATTTTGC CAAACTTCGAAAAAGACATGGTGCAACTTGTAACGAAGAACTTCAAGACTAAGGGTGTCGATGTGATTACCGGTGCTATG GCTAAAGAATCAATCGAAACAGATCAAAACGTGACTGTTAAATACGAAGTTGGCGGCAAGGAAGAACAATTGGTTGCCGA TTATGTCATGGTAACTGTTGGTCGTCGTCCTAATACTGATGATATGGGCTTGGAACAAGCTGGTATCAAGATGGCTGATC GTGGTTTAATCGAAGTTGATCAACAAGGTCAAACTAATATCAAAGGCATCTATGCTATTGGTGATATTGTTTCCGGTGCT GCGTTGGCTCATAAGGCCAGTTATGAAGCTAAAATTGCTGCCGAAGCAATCGCTGGTAAAAAAGTGATTGTGGACTACAA AGCGATGCCAGCGGTTTGTTATACTGATCCAGAATTGGCAACCACTGGTTTAACGGTTGCTGAAGCAAAAGAAAAAGGCT ATAACGCCAAAGGTTTTAAATTCCCATTTGCTGCTAACGGTCGTGCGTTGTCGTTGGCTGAAACTGACGGTTTTGTACGC TTAGTAACGAATACTGACGATAATACGTTGCTTGGTGCACAAGTAGCAGGCGTTGGTGCTAGCGACTTGATCTCAGAATT AACCTTAGCAATTGAATCAGGGATGAATGCGGAAGATTTAGCCTTAACAATTCACCCACATCCAACATTGAGTGAAGCAA TTATGGATGATGCTGAATTAGCATTAGGCCTACCAATTCACATCTAA Protein sequence : MVVGDFAIELETVVIGSGPGGYVAAIRAAEMGQKVTVIERENIGGICLNVGCIPSKALISAGHRLQEAKNSEVFGVSTTG ATLDFAKTQDWKQHQVVEKLTGGISMLFKKHKIDVLDGSAFLVDEHSLRVIKEESAQTYSFKNLIIATGSRPIEIKGFKF NKRVIDSTGGLNLTEVPKELVVIGGGYIGSELAGAYANLGAHVTILEGTDSILPNFEKDMVQLVTKNFKTKGVDVITGAM AKESIETDQNVTVKYEVGGKEEQLVADYVMVTVGRRPNTDDMGLEQAGIKMADRGLIEVDQQGQTNIKGIYAIGDIVSGA ALAHKASYEAKIAAEAIAGKKVIVDYKAMPAVCYTDPELATTGLTVAEAKEKGYNAKGFKFPFAANGRALSLAETDGFVR LVTNTDDNTLLGAQVAGVGASDLISELTLAIESGMNAEDLALTIHPHPTLSEAIMDDAELALGLPIHI |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| SE0077 | NP_763632.1 | dihydrolipoamide dehydrogenase component of pyruvate dehydrogenase E3 | Not tested | SCCpbp4 | Protein | 6e-103 | 49 |
