Gene Information

Name : LSA1013 (LSA1013)
Accession : YP_395624.1
Strain : Lactobacillus sakei 23K
Genome accession: NC_007576
Putative virulence/resistance : Resistance
Product : ABC transporter ATP-binding protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 1003420 - 1004148 bp
Length : 729 bp
Strand : -
Note : -

DNA sequence : 
ATGATAAATACAGTACTTTCAGTTGATCAGTTAACACAGGTGGTACCAATTGGGCAGTCTGACCGAACGACAACCATATT
GAAAAATATTTCGTTTAAGGTCCAAAAAGGAGAATTGGTGAGCATTGTGGGACCCTCTGGATCCGGTAAGAGTACGCTAT
TATACAGTATTTCTAGGATTACGAGGCCAACAAGCGGCACCGTGACAATTGCGGGGGTTAATCCGTATCAATTGAAACCT
AATCAATTAGCGGCTTTTCGTAGACAGATAATTGGCTTCATCTTTCAACAATATAATTTAATTCAGTCACTTCCTGTGTT
TGAAAATATCGTTATACAGCAACGACTGAGTCATCAGCAACCGAAACGTTCTGAGATTGAACAATTACTGACAAAATTGA
ACTTTGCAGGTCAAATCGATGGTGCAGTTGAGACCTTATCAGGTGGTGAGCAACAAAAAGTCGCGATTGCCCGCACGATT
CTAACTGATTGTGATGTGCTGTTTGCTGATGAACCAACGGGTGCGCTAGATTCGGTATCCAAATCGATTATTTTTACATA
TTTCAAAGAGATGGTTGCCAAAGGTAAAACGGTGATTATGGTGACCCACGATATTGAGTTGGCTAGTCAGACAGATCGTG
CGATTGTGTTAAAAGACGGTCAGGTTCAACAAATTGTGCCTGAACCGTCACTTGAGGCAATCTATGCAGCCTTGGATAAG
GTGGTGTAA

Protein sequence : 
MINTVLSVDQLTQVVPIGQSDRTTTILKNISFKVQKGELVSIVGPSGSGKSTLLYSISRITRPTSGTVTIAGVNPYQLKP
NQLAAFRRQIIGFIFQQYNLIQSLPVFENIVIQQRLSHQQPKRSEIEQLLTKLNFAGQIDGAVETLSGGEQQKVAIARTI
LTDCDVLFADEPTGALDSVSKSIIFTYFKEMVAKGKTVIMVTHDIELASQTDRAIVLKDGQVQQIVPEPSLEAIYAALDK
VV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 4e-35 43
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-39 41
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 2e-39 41
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-39 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
LSA1013 YP_395624.1 ABC transporter ATP-binding protein CP001581.1.gene798.p Protein 1e-34 46
LSA1013 YP_395624.1 ABC transporter ATP-binding protein CP001581.1.gene598.p Protein 2e-34 42