Gene Information

Name : Suden_2042 (Suden_2042)
Accession : YP_394551.1
Strain : Sulfurimonas denitrificans ATCC 33889
Genome accession: NC_007575
Putative virulence/resistance : Virulence
Product : ABC transporter-like protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 2128719 - 2129429 bp
Length : 711 bp
Strand : +
Note : -

DNA sequence : 
ATGACACTAGATGAGAAAGAAGCCGTTATCTCTCTTCATAAAGTGGTAAAATCTTATGGCAGCGCAGAAGCTACAACTTA
CGCTCTTCGTGGTGTAAATCTTGAGATTAAACGTGGTGAATTTGTTGCAATAATGGGTCCTAGCGGTTCAGGAAAATCTA
CGGCTATGAATATCATAGGATGCTTAGATACTCTAAGCAGTGGCGACTATCTATTTGGTGGTGTAGATATCCAAAAGCTC
TCTCTTGACCAAAGAACCCTCCTTCGCCGCAATTACATCGGTTTTATATTTCAAGGATTCAATCTCTTGGGCAAAACAAC
TGCTATTGAAAATGTTGAACTGCCTCTTTTATATCGAGGTTTTCCAGCACGCCAAAGATCAGAAATGGCAATGAATGCAC
TTCGCAGCGTTGGTCTTGAGCAAGTGGCACATCACACACCAGCAGAACTCTCAGGCGGACAACAACAAAGAGTTGCTATT
GCAAGAGCCATAGTTACAGACCCTTTTATTTTACTAGCAGATGAGCCTACTGGGAATTTAGACACTGCAAAAAGCAGAGA
GATTATGGAGCTGCTTAGCTCATTTAACAAAGAAAAAGGATTAACTATTGTCATGGTAACGCATGAGAATGAGATGGCAT
CTTACGCTTCTAGAATTATCCGTTTTCGTGATGGAAAGATTGATGATACACTACATGTAGAGAAAGCTTGA

Protein sequence : 
MTLDEKEAVISLHKVVKSYGSAEATTYALRGVNLEIKRGEFVAIMGPSGSGKSTAMNIIGCLDTLSSGDYLFGGVDIQKL
SLDQRTLLRRNYIGFIFQGFNLLGKTTAIENVELPLLYRGFPARQRSEMAMNALRSVGLEQVAHHTPAELSGGQQQRVAI
ARAIVTDPFILLADEPTGNLDTAKSREIMELLSSFNKEKGLTIVMVTHENEMASYASRIIRFRDGKIDDTLHVEKA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cur_1502 YP_001800896.1 cell division ATP-binding protein FtsE Not tested Not named Protein 5e-31 43
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-28 42
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-30 41
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 2e-30 41
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-30 41
Spaf_1862 YP_006310627.1 amino acid ABC transporter ATP-binding protein Not tested FWisland_2 Protein 9e-27 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Suden_2042 YP_394551.1 ABC transporter-like protein NC_012469.1.7686878. Protein 6e-49 54
Suden_2042 YP_394551.1 ABC transporter-like protein NC_008702.1.4606598. Protein 2e-41 47
Suden_2042 YP_394551.1 ABC transporter-like protein CP001581.1.gene598.p Protein 6e-34 45
Suden_2042 YP_394551.1 ABC transporter-like protein CP001581.1.gene798.p Protein 7e-35 44
Suden_2042 YP_394551.1 ABC transporter-like protein NC_012469.1.7685735. Protein 4e-35 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Suden_2042 YP_394551.1 ABC transporter-like protein VFG0869 Protein 3e-23 42