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Name : lysS (Tcr_0726) Accession : YP_390996.1 Strain : Thiomicrospira crunogena XCL-2 Genome accession: NC_007520 Putative virulence/resistance : Virulence Product : lysyl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : - Position : 797526 - 799040 bp Length : 1515 bp Strand : + Note : class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA DNA sequence : ATGGCAAACCCTGAAAACCCAACTCCTGAAGTCGATGAAAATAAAATCATTGCGGAACGACGTGCAAAATTAGCGGCTCT GCGTGAAGCCGGTCACTCTTACCCAAATACGTTTAGACGTAACGATGTGTCGAGTGACTTGCATGAGCAATACGATGCCT TCAGTAAAGAAGAACTGGCTGAGATGGAACCTGTTCGTGTCAAAGTCGCCGGTCGTATGTTATTGCGTCGTATTATGGGG AAAGCCAGTTTTGCGACATTGCAGGATACACATGGTCGTATTCAGATTTACGTGACACGTGATGAGTTGCCTGAAGGGTT TTACAATACGCAATTCAAAAAATGGGACTTAGGGGATATTGTTGGTGCGGAAGGGTATCTTTTCAAAACCAATACTGGCG AGTTGTCTGTTCATGTTGAACATATTGAATTGATTACCAAATCGTTGCGTCCTTTACCTGATAAATTCCACGGGTTACAA GATCAGGAAATCAAATATCGTCAGCGTTATGTGGATTTGATCGTGAACGAAGAAAGTCGTGACACTTTCATGATCCGTTC AAAAATCGTACAGCATGTCCGTAACTTTTTAATTAATAAAGGTTTTATGGAAGTTGAAACGCCGATGATGCATGTCATTC CGGGTGGGGCGACCGCCAAACCATTCCATACGCATCACAATGCTTTAGACATGCCACTTTATTTGCGAATTGCGCCTGAG CTTTACCTGAAGCGTTTGGTTGTGGGTGGGTTTGAAAAGGTTTTCGAAATCAATCGAAGCTTCCGTAATGAAGGCTTGTC GACTCGCCATAACCCAGAGTTCACCATGGTTGAGTTCTATTCGGCCTACACCGATTACAATCAATTGATGGATTACACGG AAGAATTGCTAAAAGAATTGGCAGAACTGACGGTTGGCTCTTCTCAGGTACCTTATCAAGGTCAAGTGTTTGATTTCGGG AAACCCTTTGCGCGCCTAACGATGAAAGATGCGATTTTGAAATACAACCCAAGCGCGACGGCTGAAAATCTAGACGACTT AGAGTCAGCACGTGCATTGGCGAAATCGTTGAATGTGCATGTGGAAGAGAGTTATGGATTAGGCAAAATCTGGACGGAAA TTTTCGAAGAAACGGCGGAAGAAAAACTGATGGACCCTACGTTCATTACTGAGTATCCGGCAGAAGTGTCACCATTGGCG CGTCGTAATGACGATAATCCGTTTATTACCGATCGTTTTGAATTGTTCATTGGCGGGCGAGAGTTGGCGAATGGCTTTAA CGAGTTGAATGATGCGGAAGATCAAGCTGAACGCTTTAAGGCGCAGGTTGAAGCGAAGGATGCCGGAGATGATGAAGCCA TGCATTATGATGAAGATTACATTGTGGCGCTTGAGCACGGTATGCCGCCAACAGCAGGGGAAGGAATCGGGATTGACCGC TTGGTGATGTTGTTTACCGACAAACCAACCATTCGCGATGTCTTGTTGTTCCCGCATATGAGACAAGCCGATTAA Protein sequence : MANPENPTPEVDENKIIAERRAKLAALREAGHSYPNTFRRNDVSSDLHEQYDAFSKEELAEMEPVRVKVAGRMLLRRIMG KASFATLQDTHGRIQIYVTRDELPEGFYNTQFKKWDLGDIVGAEGYLFKTNTGELSVHVEHIELITKSLRPLPDKFHGLQ DQEIKYRQRYVDLIVNEESRDTFMIRSKIVQHVRNFLINKGFMEVETPMMHVIPGGATAKPFHTHHNALDMPLYLRIAPE LYLKRLVVGGFEKVFEINRSFRNEGLSTRHNPEFTMVEFYSAYTDYNQLMDYTEELLKELAELTVGSSQVPYQGQVFDFG KPFARLTMKDAILKYNPSATAENLDDLESARALAKSLNVHVEESYGLGKIWTEIFEETAEEKLMDPTFITEYPAEVSPLA RRNDDNPFITDRFELFIGGRELANGFNELNDAEDQAERFKAQVEAKDAGDDEAMHYDEDYIVALEHGMPPTAGEGIGIDR LVMLFTDKPTIRDVLLFPHMRQAD |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 2e-141 | 60 |
| lysS | YP_005163386.1 | lysyl-tRNA synthetase | Not tested | Not named | Protein | 3e-80 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | YP_390996.1 | lysyl-tRNA synthetase | VFG1668 | Protein | 9e-142 | 60 |
