|
Name : Tcr_0251 (Tcr_0251) Accession : YP_390521.1 Strain : Thiomicrospira crunogena XCL-2 Genome accession: NC_007520 Putative virulence/resistance : Virulence Product : type II secretion system protein E Function : - COG functional category : N : Cell motility COG ID : COG2804 EC number : - Position : 302287 - 303741 bp Length : 1455 bp Strand : + Note : - DNA sequence : ATGAACGCACTTCCCTTTCCATTTGCGAACAAAAACGGGGTTGTCTTAGGGATGCACCCTGATATTGGGCGCGTTTTATA TTGTTTGGAACAGACTTCTCCTACAGTTTTGATGGAAGTACAACGCGTTTTTGGCAGTGAAGATTTAGTGGTACGACCAT TATCCGAATCCGCATTTGAAAAACAACTACAAGCGCAATATGCTTCACAGTCGTCTAACTCCATAGAAGCCATGGATGAA CTGGACATTCCTGATTTAGATCAAGCCATGGCCGAAGTCGCGACAGCGGAAGATTTGCTGAACAGTAATGATGATGCACC AATCATTAAATTGCTGAATGCGATTTTGGCAGAAGCCATCCGCAAGAATGCATCTGATATTCATATCGAACCGTTTGAAA CGCAATTGCGGGTGCGTTTCAGAATTGATGGTCAGTTGAAAGTGGTGCTGACCCCTAAAATTCAGTTTGCTTCAATGCTG GTTTCTCGTATCAAAGTAATGGCGAAGCTGGATATTGCGGAAAAAAGATTACCTCAAGATGGTCGTATTGCGATCAAGCT GGGTGGGCGTGCCGTCGACTTACGAATTTCAACCATTCCTTCCAGTTTTGGTGAGCGTGTGGTAATGCGACTGCTGGATA AAAGTGCTGGCCGATTGGATTTAACGGATTTAGGTCTGCCAGATGAACAGCTTTTACGCCTTAAGAAACTGTTACAAAAA CCGCATGGCATTTTGTTGGTAACCGGCCCTACCGGTTCCGGTAAAACAACTACCTTATATGCGGGGTTGTCCCGTTTAAA TGACAATCAACGAAATATCATGACCGTTGAAGACCCTATTGAATATAACATTGAGGGGATTAACCAGACTCAGGTGAATA CCAAAGCCGAGATGACGTTTGCCAAAGGCTTAAGAGCGATTCTGAGGCAAGATCCCGATGTTGTTATGATCGGTGAGATT CGTGACTATGAAACCGCAGAAATTGCCGTGCAAGCTTCTTTAACAGGGCATTTGGTTTTATCGACCTTGCATACCAATAC GGCTGTGGGCGCCATTTCGCGGTTGAAAGACATGGGCGTGGAACCGTTTTTATTGTCTTCCAGTTTGTTAGGCGTGATGG CACAGCGCTTGGTTCGTCAGATTTGCCCGGAATGTGGTGAGAAAAAGCCGGCGGATGATGCCGAGTGTCAGATATTAGGC GTGGCGTCCGCTGAAATTATGCACCCTGTCGGGTGTGAGGCTTGTTCTTACACTGGATACCAAGGTCGAATAGGGATTTA TGAGTTGTTAGAAATTGATAATACTGTACGTCAAATGATTCATTCGGGCGAATCCGATCAAGCGATTGAAACGTATGTTC ATCAAACCACACCGTCGATTTACCAAAGTGCCATGCAACTGGTTCTTAATCGACAGACTTCTCTGGAAGAGGTGATGCGT GTGGTACAGCGTTAA Protein sequence : MNALPFPFANKNGVVLGMHPDIGRVLYCLEQTSPTVLMEVQRVFGSEDLVVRPLSESAFEKQLQAQYASQSSNSIEAMDE LDIPDLDQAMAEVATAEDLLNSNDDAPIIKLLNAILAEAIRKNASDIHIEPFETQLRVRFRIDGQLKVVLTPKIQFASML VSRIKVMAKLDIAEKRLPQDGRIAIKLGGRAVDLRISTIPSSFGERVVMRLLDKSAGRLDLTDLGLPDEQLLRLKKLLQK PHGILLVTGPTGSGKTTTLYAGLSRLNDNQRNIMTVEDPIEYNIEGINQTQVNTKAEMTFAKGLRAILRQDPDVVMIGEI RDYETAEIAVQASLTGHLVLSTLHTNTAVGAISRLKDMGVEPFLLSSSLLGVMAQRLVRQICPECGEKKPADDAECQILG VASAEIMHPVGCEACSYTGYQGRIGIYELLEIDNTVRQMIHSGESDQAIETYVHQTTPSIYQSAMQLVLNRQTSLEEVMR VVQR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 9e-126 | 57 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 6e-126 | 57 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Tcr_0251 | YP_390521.1 | type II secretion system protein E | VFG0182 | Protein | 3e-129 | 58 |
| Tcr_0251 | YP_390521.1 | type II secretion system protein E | VFG2048 | Protein | 2e-126 | 57 |
| Tcr_0251 | YP_390521.1 | type II secretion system protein E | VFG1876 | Protein | 3e-121 | 54 |
| Tcr_0251 | YP_390521.1 | type II secretion system protein E | VFG2426 | Protein | 1e-68 | 46 |
| Tcr_0251 | YP_390521.1 | type II secretion system protein E | VFG1880 | Protein | 6e-81 | 45 |
| Tcr_0251 | YP_390521.1 | type II secretion system protein E | VFG0112 | Protein | 4e-81 | 43 |
