Gene Information

Name : Tcr_2187 (Tcr_2187)
Accession : YP_392449.1
Strain : Thiomicrospira crunogena XCL-2
Genome accession: NC_007520
Putative virulence/resistance : Virulence
Product : Fis family transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2204
EC number : -
Position : 2411263 - 2412633 bp
Length : 1371 bp
Strand : -
Note : -

DNA sequence : 
ATGACCGCCAGCCCAGATAAATCGGCAGCGACATTTGAAGGCCAGAAAATTTTATTGGTCGACGACGACACCAGTCTGTT
AAAACTGCTGTCAATTCGTCTACGCTCATTCGGGCTGACGGTTGAAACGGTGGAAGGTGCGGCCGAAGCGCTTGCCAAAT
TACCCACGTTTCAACCGCATTTGGTTCTGACCGACTTGCGTATGTCGGAAATGGATGGCTTAGCATTGTATGAACAAATT
CATCAACAATCGCCGACCTTGCCCGTCATTATCATGACTGCGCACGGTACAATCAAAGAAGCCGTTGAAGCGACGAGCTT
AGGGGTTTTTGGATTTATCACCAAGCCGATTAACCATGCCGAACTCACCCAAAAAATTCAACAGGCACTGACCGTGCATC
ACCCAGTGATGGCGACCGAAAAGCAAGCCAAATGGCGGCATAACATTATTGGTCAGAGCCAGGTCATGGAAGCGTTGTTG
CAGGATTTGTATCATGTTGCTCAAAGCGATATCAGTGTTTACATCCAAGGTGAAAGTGGAACGGGTAAGGAACTGATTGC
ACAAGCCATTCATGCGGCCAGCCCTCGACACAAAAAACCGTTCATTGCTGTTAACTGCAGTGCGATTCCCGAGGACTTAT
TAGAGTCGGAATTATTTGGTCATAAACGAGGTGCTTTCTCCGGTGCCGTTGAAAACCGAAAAGGCTTGTTTGAACTGGCC
GATGGCGGTGTTTTGTTTTTGGATGAAATCGGCGATATGTCACCGGCCTTTCAGGTGAAGTTACTTCGAGCGTTGCAGGA
AAACGAAATTCGTCCAGTCGGTGCCGATAAAACCGTTTCAATTGATGTCAGAGTGGTGTCGGCCAGTCATAAAGATCTGA
AGCAACTGGTGGAAGAAAAAGCATTTCGTCTGGATTTATATTATCGGTTGAACATTGTGACCTTAAAGCTGCCGACGTTA
AAACAACGACCTGAAGACATTCCCTTGTTGGCCAGCTACTTTATTTCGCAACAACGCGGTAAGGCCAAAAAATTATCAAA
CGAAGCCATGGAGCTGTTATTAGGTTATGACTGGCCGGGAAATATTCGTGAGTTAAAAAATGTCATTGAGCAGGTGTGTA
CCTTTGCAACAGCACCACTGATTCCTGCGAGCTTAATTGAAAAAGCCTTGCAACAAGAAAACTTAACCATGGTGTCGTTG
CAAGAAGCCAAGTTAAATTTTGAGCGTGATTACCTCATTCGGGTGCTGAAGCTGGTCGGCGGGAATGTCTCTCATGCGGC
ACGCATTGCACAACGAAATCGCACCGAGTTTTATCGCCTGCTGGATCGTCATCAACTGAAACCCGCAGAGTTCAAACAAA
AATCACAATAA

Protein sequence : 
MTASPDKSAATFEGQKILLVDDDTSLLKLLSIRLRSFGLTVETVEGAAEALAKLPTFQPHLVLTDLRMSEMDGLALYEQI
HQQSPTLPVIIMTAHGTIKEAVEATSLGVFGFITKPINHAELTQKIQQALTVHHPVMATEKQAKWRHNIIGQSQVMEALL
QDLYHVAQSDISVYIQGESGTGKELIAQAIHAASPRHKKPFIAVNCSAIPEDLLESELFGHKRGAFSGAVENRKGLFELA
DGGVLFLDEIGDMSPAFQVKLLRALQENEIRPVGADKTVSIDVRVVSASHKDLKQLVEEKAFRLDLYYRLNIVTLKLPTL
KQRPEDIPLLASYFISQQRGKAKKLSNEAMELLLGYDWPGNIRELKNVIEQVCTFATAPLIPASLIEKALQQENLTMVSL
QEAKLNFERDYLIRVLKLVGGNVSHAARIAQRNRTEFYRLLDRHQLKPAEFKQKSQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 7e-61 42
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 7e-61 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Tcr_2187 YP_392449.1 Fis family transcriptional regulator BAC0467 Protein 2e-76 43
Tcr_2187 YP_392449.1 Fis family transcriptional regulator BAC0089 Protein 3e-77 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Tcr_2187 YP_392449.1 Fis family transcriptional regulator VFG1214 Protein 4e-70 44