Gene Information

Name : Tcr_1439 (Tcr_1439)
Accession : YP_391705.1
Strain : Thiomicrospira crunogena XCL-2
Genome accession: NC_007520
Putative virulence/resistance : Virulence
Product : ATPase FliI/YscN
Function : -
COG functional category : N : Cell motility
COG ID : COG1157
EC number : 3.6.3.15
Position : 1555611 - 1556951 bp
Length : 1341 bp
Strand : -
Note : -

DNA sequence : 
ATGATTAAACAACTTTTTAATCAGTATCTACATTATAAATTTTCAGAATTATCCGAACAAATACCCCAAAAATCCAACCT
CCAAATAGAAGGACGATTGGTTCGAATGGTCGGTATGACATTGGAAGTTGTTGGAACTTATGCACCTATCGGGTCACGTT
GTCAGGTTCTTTCCAAAAACGAACCGCCAATAGAAGCGGAAGTCGTTGGTTTTAACGATGATCGCCTTTACTTAATGCCC
ATTGGAAAAATTCACGGGCTTGAACCGAATGCAAGGGTGATTCCCGTTTCTGGCGGCATTAAGGTGGGTGTTAGCTCTTC
AATGCTTGGACGAATTATTGATGGCGCTGGTAACCCTTTAGATGATAAAGGCCCCATCTCTTTTGATAAAAGAGTTTCTT
TAAACGGAGATAAAATCAATCCTCTTCACCGTGCGCCGATTAAAGAGCCTTTAGATGTTGGAATTAAAACAATCAACGGT
CTTTTAACGCTTGGGAAAGGTCAAAGGGTGGGGCTTTTAGCAGGAACAGGGGTGGGTAAAAGTGTCTTGCTAGGCATGAT
GACACGGTTTACTGATGCAGAAGTTGTTGTTGTCGGTTTGGTTGGAGAGCGTGGCCGAGAGGTCAATGACTTTGTCAGAA
ATAACCTTGGTGAAGAAGGTCTCAAACGATCGGTTGTCGTTGCAACTCCGGCAGATGATCCACCTTTGATGCGTCTACAT
GGTGCGATGTTGGCAACATCCGTTGCTGAATATTTTAGAGACCAAGGTAAGAATGTTTTGCTTTTGATGGATTCTCTGAC
ACGTTTTGCGCAAGCACAGCGTGAAATTGCGTTGGCCGTAGGTGAACCGCCTGCCAGTAAAGGGTATCCACCTTCTGTGT
TTGCTAAGCTGCCTCAGTTGGTTGAGAGAGCAGGGAATGGCGCAAGCCATTCCGGTTCGATTACGGCTATTTATACCGTT
TTGGCGGAGGGGGATGATCAAAATGATCCTGTTGTAGACTCTGCGAGAGGTGTGTTGGATGGTCATATTTTATTGTCCAG
ACAAATAGCCGATTCTGGACGATACCCTGCTATTGATATTGAAGCATCCATCAGTCGTGTGATGATTGATGTGGTTCCTC
AGCAGCAAAATAAATTAGCAAGACGCTTTAAACAACTTTATTCGACGTATCAACAAAACCAAGATTTGATCAGTATTGGG
GCATATCGTAAAGGGACTGATGCAGCGATTGATGAGGCCATTGAAAAACACCCTCAGCTAAGTCATTTTCTGTCGCAATC
CATTGATGAATCTTTTTCTGTTAAAGAGAGTTTATCGGCACTTGAATCAGTTCTTTCTTAA

Protein sequence : 
MIKQLFNQYLHYKFSELSEQIPQKSNLQIEGRLVRMVGMTLEVVGTYAPIGSRCQVLSKNEPPIEAEVVGFNDDRLYLMP
IGKIHGLEPNARVIPVSGGIKVGVSSSMLGRIIDGAGNPLDDKGPISFDKRVSLNGDKINPLHRAPIKEPLDVGIKTING
LLTLGKGQRVGLLAGTGVGKSVLLGMMTRFTDAEVVVVGLVGERGREVNDFVRNNLGEEGLKRSVVVATPADDPPLMRLH
GAMLATSVAEYFRDQGKNVLLLMDSLTRFAQAQREIALAVGEPPASKGYPPSVFAKLPQLVERAGNGASHSGSITAIYTV
LAEGDDQNDPVVDSARGVLDGHILLSRQIADSGRYPAIDIEASISRVMIDVVPQQQNKLARRFKQLYSTYQQNQDLISIG
AYRKGTDAAIDEAIEKHPQLSHFLSQSIDESFSVKESLSALESVLS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcN YP_362163.1 type III secretion system ATPase Virulence Hrp PAI Protein 1e-82 47
hrcN YP_198730.1 type III secretion system ATPase Virulence Hrp PAI Protein 6e-83 47
hrpB6 AAB08461.1 HrpB6 Virulence Hrp PAI Protein 1e-82 47
hrcN NP_640767.1 type III secretion system ATPase Virulence Hrp PAI Protein 2e-83 47
hrpB6 BAB07852.1 HrpB6 Virulence Hrp PAI Protein 4e-83 47
hrpB6 AAF61281.1 HrpB6 Virulence Hrp PAI Protein 4e-83 47
hrcN AAP34339.1 HrcN Virulence Hrp PAI Protein 6e-84 47
XC_3006 YP_244074.1 type III secretion system ATPase Virulence Hrp PAI Protein 9e-80 46
hrcN NP_636610.1 type III secretion system ATPase Virulence Hrp PAI Protein 9e-80 46
YPO0267 YP_002345348.1 type III secretion system ATPase Virulence Not named Protein 3e-70 46
ssaN NP_460380.1 type III secretion system ATPase Virulence SPI-2 Protein 2e-65 45
ssaN YP_216423.1 type III secretion system ATPase Virulence SPI-2 Protein 1e-65 45
ssaN CAA70537.1 secretion system apparatus Virulence SPI-2 Protein 1e-65 45
ssaN NP_456113.1 putative type III secretion ATP synthase Virulence SPI-2 Protein 7e-65 45
ssaN NP_805086.1 type III secretion system ATPase Virulence SPI-2 Protein 7e-65 45
escN AAC38383.1 EscN Virulence LEE Protein 1e-67 45
escN YP_003232153.1 T3SS structure protein EscN Virulence LEE Protein 7e-67 45
escN CAC81862.1 EscN protein Virulence LEE II Protein 6e-67 45
escN YP_003223475.1 translocator EscN Virulence LEE Protein 7e-67 45
escN CAI43874.1 EscN protein Virulence LEE Protein 5e-67 45
escN AAK26715.1 EscN Virulence LEE Protein 5e-67 45
escN AAL57542.1 EscN Virulence LEE Protein 5e-67 45
unnamed AAL06369.1 EscN Virulence LEE Protein 5e-65 45
escN YP_003236088.1 translocator EscN Virulence LEE Protein 3e-67 45
lscN AAO18044.1 LscN Virulence TTSS locus Protein 3e-75 44
hrcN AAR25633.1 type III secretion cytoplasmic ATPase HrcN Not tested Not named Protein 2e-60 44
escN AFO66300.1 putative LEE-encoded type III secretion system ATPase Virulence SESS LEE Protein 1e-62 44
escN AFO66415.1 putative LEE-encoded type III secretion system ATPase Virulence SESS LEE Protein 1e-62 44
escN NP_290268.1 hypothetical protein Virulence LEE Protein 2e-67 44
ECs4568 NP_312595.1 EscN Virulence LEE Protein 2e-67 44
escN AAC31513.1 L0034 Virulence LEE Protein 1e-67 44
unnamed ACU09458.1 type III secretion apparatus H+-transporting two-sector ATPase Virulence LEE Protein 1e-67 44
hrcN AAG33879.1 HrcN Virulence Hrp PAI Protein 3e-60 43
hrcN AAT96258.1 HrcN Virulence S-PAI Protein 7e-64 42
hrcN AAT96299.1 HrcN Virulence S-PAI Protein 3e-64 42
hrcN AAT96339.1 HrcN Virulence S-PAI Protein 1e-64 42
hrcN ABA47275.1 HrcN Virulence S-PAI Protein 2e-68 42
hrcN NP_791227.1 type III secretion cytoplasmic ATPase HrcN Virulence Hrp PAI Protein 2e-61 42
hrcN AAT96141.1 HrcN Virulence T-PAI Protein 3e-62 42
hrcN AAT96195.1 HrcN Virulence T-PAI Protein 3e-62 42
invC AAS66861.1 InvC Not tested SSR-2 Protein 3e-55 42
hrcN AAB06001.1 HrcN Virulence Hrp PAI Protein 3e-62 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Tcr_1439 YP_391705.1 ATPase FliI/YscN VFG1254 Protein 9e-119 61
Tcr_1439 YP_391705.1 ATPase FliI/YscN VFG2499 Protein 3e-102 55
Tcr_1439 YP_391705.1 ATPase FliI/YscN VFG2331 Protein 2e-96 54
Tcr_1439 YP_391705.1 ATPase FliI/YscN VFG0048 Protein 7e-80 48
Tcr_1439 YP_391705.1 ATPase FliI/YscN VFG0192 Protein 1e-78 47
Tcr_1439 YP_391705.1 ATPase FliI/YscN VFG2144 Protein 1e-82 45
Tcr_1439 YP_391705.1 ATPase FliI/YscN VFG0390 Protein 4e-77 45
Tcr_1439 YP_391705.1 ATPase FliI/YscN VFG0515 Protein 8e-66 45
Tcr_1439 YP_391705.1 ATPase FliI/YscN VFG0730 Protein 7e-68 45
Tcr_1439 YP_391705.1 ATPase FliI/YscN VFG0812 Protein 8e-68 44