Gene Information

Name : Tcr_1173 (Tcr_1173)
Accession : YP_391442.1
Strain : Thiomicrospira crunogena XCL-2
Genome accession: NC_007520
Putative virulence/resistance : Resistance
Product : lipoprotein releasing system, ATP-binding protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 1278826 - 1279518 bp
Length : 693 bp
Strand : +
Note : -

DNA sequence : 
ATGAGTGATTTAATTTTACAAGCCTCGAATCTTGAAAAAGAATACCGCGACGGAAAGTTAAAAACGCCGGTCATTAAAGG
ACTGGATTTTGAACTGAGAGCGAATGAAAAGGTCGCGATTGTTGGCAGCTCTGGCTCGGGAAAAAGTACCTTGTTACATT
TACTGGCAGGTCTTGATAAACCAACCGGGGGAACTGTCTCCTTAATGTCGCAAGCGTTTTCAGGTTTAAATGAAGTGAAA
CGAGGGCGCCTGCGTAATCAATACATGGGTTTTGTTTATCAATTTCATTTTCTACTGCCAGAATTGAATGCACTGGAAAA
TGTAATGCTGCCTTTACGCGTCAGACGGACGCCTTCAAAAGACGCCGAAAAACAGGCAAGTGCATTACTTGACCGCGTTG
GTCTTGGGCACCGTATTCATCACAAACCGTCAGAGTTATCAGGAGGGGAGCGTCAACGAGTTGCGATTGCTCGCGCTTTA
ATCACCAAACCCGCCTGTGTGTTAGCGGACGAACCGACAGGCAACCTGGATGAAAGCTCTGCGCAACAGGTATTCGATTT
AATGCTGGAATTAAACCAAGAGCAAAACACTGCATTATTGGTTGTCACGCACGATTTAAAATTGGCCGCAAAAATGGATC
GTCAATATCAATTAACAGAAGGGCATTTTATTCTGCCTTCAGAAACGCTTTAA

Protein sequence : 
MSDLILQASNLEKEYRDGKLKTPVIKGLDFELRANEKVAIVGSSGSGKSTLLHLLAGLDKPTGGTVSLMSQAFSGLNEVK
RGRLRNQYMGFVYQFHFLLPELNALENVMLPLRVRRTPSKDAEKQASALLDRVGLGHRIHHKPSELSGGERQRVAIARAL
ITKPACVLADEPTGNLDESSAQQVFDLMLELNQEQNTALLVVTHDLKLAAKMDRQYQLTEGHFILPSETL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-28 41
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 2e-28 41
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-28 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Tcr_1173 YP_391442.1 lipoprotein releasing system, ATP-binding protein NC_012469.1.7686878. Protein 9e-38 46
Tcr_1173 YP_391442.1 lipoprotein releasing system, ATP-binding protein NC_008702.1.4606598. Protein 1e-27 42