Gene Information

Name : Dde_0109 (Dde_0109)
Accession : YP_386605.1
Strain : Desulfovibrio alaskensis G20
Genome accession: NC_007519
Putative virulence/resistance : Virulence
Product : Fis family transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2204
EC number : -
Position : 100305 - 101705 bp
Length : 1401 bp
Strand : -
Note : KEGG: dvu:DVU3381 transcriptional regulatory protein ZraR; PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver region; Helix-turn-helix, Fis-type; SMART: Signal transduction response regulator, receiver regi

DNA sequence : 
ATGACAAACGCTCCTACCATATTGATAGTGGATGATGATCAGGCGCACAGAACCATGCTGCGCACCATGCTGCGCGGCTG
GCAGTACTCGGCGGAAGAAGCCGACGACGGTTCCGTGGCCGTGAGCAAGGTGCAGGAGCGCGCATATGACGCCATCCTGA
TGGATATCCGCATGGCCCGCATGAGCGGCATAGAAGCCCTGCGGCATATCATGGCCCACAATCCGGCCATTCCCGTGCTT
ATCATGACGGCATATTCTTCGGTGAATACAGCGGTGGAAGCCCTGAAAATAGGTGCTTATGACTACCTGACAAAGCCGCT
TGATTTCGACGAGCTGAAACTGACGCTGGAGCGCGCGCTTGATCACACGCGGCTGGCCTCGGAAAACAGAGAGCTGCGCA
GCTCTCTGTCCGCGGGGCAGGCTGCCTCGCGCATTATCGGCCGCAGCGAGGCCGTGCGCCGGCTTACCGAGCTGGTGGCC
ACAGTGGCGCCCAGCGACGCCACGGTACTCATCACCGGAGAATCGGGCACAGGCAAAGAACTGGTGGCCAGAGCCATACA
CGAAGGAAGCAGCAGACGTGACAGACCGCTGGTAACCGTCAACTGCGCCGCCCTTACGGAATCGCTGCTGGAATCAGAAC
TGTTCGGCCACGAAAAAGGTGCTTTTACCGGTGCGGACAAAAAACGCGACGGGCGGTTTGTTCAGGCGGACGGCGGTACG
TTGTTTCTGGATGAACTGGGCGAAATGTCTCTGGCACTGCAGGCAAAGCTGCTGCGTGCGCTGCAGCAGGGTGAAATCCA
GAGGGTGGGCAGCGACAACCCGCTGAGAGTCGATGTACGCGTCATCGCCGCAACCAACCGCAATCTGACCGCAGAGGTGA
CCGCAGGCAGGTTCCGCGAAGACCTGTTTTACCGGCTCAACGTCATCGGCATAGCGGTACCGGCACTGCGGGAACGGCGC
GACGACATCCCCCTGCTGGCCGGACACTTTCTGACCCGCTATGCCGAACGTAACCGCAAGATGCTCAAAGGATTCACCCC
GCAGGCCATGAACTGTCTGGTCAACTATGACTGGCCGGGCAATGTGCGTGAACTGGAAAACGCCGTGGAGCGCGCCGTTA
TCATGAGCATGGGCGAATATGTCACCGGACGCGAACTGCCGCCGGACATTGCAGCGGCTGACGGCGAAACGGATATCACC
GCAGCAGTGCCCGATACGGACACACCGCTGCCCGACACCGTCCATGACCCCTATGCGGGGCTCTCGCTGGAAAATCTGGA
ACGCCGCGCCATTGAGGCAACGCTGCGCGAATGTGCCGACAATAAAAGCGAAGCCGCCCGCCGGCTGGGCATCACCCGCG
CAACACTGCACAACAAGCTGAAAAAATACGGCATGGAATAA

Protein sequence : 
MTNAPTILIVDDDQAHRTMLRTMLRGWQYSAEEADDGSVAVSKVQERAYDAILMDIRMARMSGIEALRHIMAHNPAIPVL
IMTAYSSVNTAVEALKIGAYDYLTKPLDFDELKLTLERALDHTRLASENRELRSSLSAGQAASRIIGRSEAVRRLTELVA
TVAPSDATVLITGESGTGKELVARAIHEGSSRRDRPLVTVNCAALTESLLESELFGHEKGAFTGADKKRDGRFVQADGGT
LFLDELGEMSLALQAKLLRALQQGEIQRVGSDNPLRVDVRVIAATNRNLTAEVTAGRFREDLFYRLNVIGIAVPALRERR
DDIPLLAGHFLTRYAERNRKMLKGFTPQAMNCLVNYDWPGNVRELENAVERAVIMSMGEYVTGRELPPDIAAADGETDIT
AAVPDTDTPLPDTVHDPYAGLSLENLERRAIEATLRECADNKSEAARRLGITRATLHNKLKKYGME

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
norR ABD94719.1 putative nitric oxide reductase transcriptional regulator Not tested ExoU island B Protein 4e-50 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Dde_0109 YP_386605.1 Fis family transcriptional regulator BAC0467 Protein 7e-119 60
Dde_0109 YP_386605.1 Fis family transcriptional regulator BAC0089 Protein 2e-91 47

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Dde_0109 YP_386605.1 Fis family transcriptional regulator VFG0116 Protein 6e-59 42
Dde_0109 YP_386605.1 Fis family transcriptional regulator VFG1249 Protein 8e-66 42
Dde_0109 YP_386605.1 Fis family transcriptional regulator VFG1214 Protein 2e-65 41
Dde_0109 YP_386605.1 Fis family transcriptional regulator VFG1248 Protein 2e-52 41