Gene Information

Name : Dde_0358 (Dde_0358)
Accession : YP_386854.1
Strain : Desulfovibrio alaskensis G20
Genome accession: NC_007519
Putative virulence/resistance : Virulence
Product : UDP-glucose 4-epimerase
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG0451
EC number : -
Position : 346760 - 347785 bp
Length : 1026 bp
Strand : -
Note : KEGG: dvm:DvMF_2280 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase

DNA sequence : 
ATGTCCAGATATACCGAACTGCTCCGTCAATTGCAGGAGGCTCCCCGCACATGGCTCATAACCGGCGTGGCGGGCTTCAT
AGGCTCCAACCTGCTTGAAACCCTGCTCAGCCACGGCCAGACCGTCACCGGTCTTGATAATTTCATGACCGGACACAGAA
AAAACCTCGACATGGTGCGCGACGCTGTCACTCCGGAACAGTGGAGCCGCTTCCGGTTCATCGAAGGTGACATCCGCTCG
CTGGAAACCTGCCGCGAAGCGTGCGCCGGCGCGGACTACGTTCTGCATCAGGCTGCGCTCGGTTCGGTACCGCGTTCCAT
TGATGACCCGCTGCTGACCAATACCTGTAACATCGACGGCTTTGTAAACATGCTGGTGGCCGCACGCGATGCGGATGTCC
GCAGATTTGTCTACGCCGCTTCCAGCTCGACCTACGGTGACGAGCCCAACCTGCCCAAGCAGGAAGACCGCATCGGCAGG
CCGCTTTCGCCGTATGCCGTTACAAAGTATGTCAACGAACTGTATGCAGACGTCTTTGCCAGAACCTACGGCATGGAATG
CACCGGACTGCGCTATTTCAACGTATTCGGCAAACGTCAGGATCCTGAAGGCGCCTATGCCGCGGTCATCCCGCTGTGGT
TTGCCGGTCTGCTGCGCGACCAGCCAGTATTCATAAACGGTGACGGCGAAACCAGCCGCGACTTCTGTCACATAGACAAC
ACTGTGCAGGCCAACCTGCTGGCGGCCACCGCTCCCGATCCCGAAGCAACCAATACTGTATACAACGTGGCCTTCGGAGA
ACGCACATCGCTGACCGAACTGTACGGCCTCATCCGCGAGGAAGTGGCGCGCCACAATCCGCATGCGTCAGAAAAAGAAG
CACAGTACCGCGATTTCCGCGCGGGCGACGTGCGCCACTCTCTGGCTGATATCAGCCGTGCCCGCACCCTGCTGGGCTAT
GATCCGCAGATTTCCGTCCGTCAGGGGCTGCGCATTTCCGGCGACTGGTACGCAGCAAACCTGTAG

Protein sequence : 
MSRYTELLRQLQEAPRTWLITGVAGFIGSNLLETLLSHGQTVTGLDNFMTGHRKNLDMVRDAVTPEQWSRFRFIEGDIRS
LETCREACAGADYVLHQAALGSVPRSIDDPLLTNTCNIDGFVNMLVAARDADVRRFVYAASSSTYGDEPNLPKQEDRIGR
PLSPYAVTKYVNELYADVFARTYGMECTGLRYFNVFGKRQDPEGAYAAVIPLWFAGLLRDQPVFINGDGETSRDFCHIDN
TVQANLLAATAPDPEATNTVYNVAFGERTSLTELYGLIREEVARHNPHASEKEAQYRDFRAGDVRHSLADISRARTLLGY
DPQISVRQGLRISGDWYAANL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tviC NP_458739.1 Vi polysaccharide biosynthesis protein, epimerase Virulence SPI-7 Protein 1e-105 63
tviC NP_807944.1 VI polysaccharide biosynthesis epimerase Virulence SPI-7 Protein 1e-105 63

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Dde_0358 YP_386854.1 UDP-glucose 4-epimerase VFG0430 Protein 6e-106 63