|
Name : Dde_3407 (Dde_3407) Accession : YP_389895.1 Strain : Desulfovibrio alaskensis G20 Genome accession: NC_007519 Putative virulence/resistance : Unknown Product : integrase catalytic subunit Function : - COG functional category : L : Replication, recombination and repair COG ID : COG4584 EC number : - Position : 3369405 - 3370433 bp Length : 1029 bp Strand : - Note : PFAM: Integrase, catalytic core; Resolvase, helix-turn-helix region; KEGG: gme:Gmet_3282 integrase catalytic subunit DNA sequence : ATGCTTACCAAGGAAGGAGTCATGGAAATTCGAATTTTGCGGCGGCAGGGAAAGTCGATCAGGTGGATCGCCAGAGAACT TGAAATTTCACGCAATACGGTTCGTAAATACCTGCGCGATTCAAGCGAGCCGATTTACGAGCGTCAGACGAAACAGCCCG GAAAGCTCGATCCTTTCAAGGATTACATCGACGAACGGGTGCGGCAGGCTTCTCCACACAGGCTGCCTGCGACGGTTATC TTTCGTGAGATTGTCGAGCAGGGATATGCGGGATCCGAGCGTCTTGTCCGATATTATGTCAGCGGTCTGTATCCTGTTCC GGCTCCCGAGCCGGACAATCGGTTCGAGACGGCCCCCGGCATACAGATGCAGGTTGACTGGTGCGTATTTCGGAGAGGGA AGGAACCGCTTTCTGCCTTTGTGGCTACTTTGGGCTTCAGCCGCCTTACGTATGTGGAGTTCGTCACGGACGAGACCTTT GCCAGCCTTCGCAAGTGCCATGAGAATGCGTTTGCCTTTTTTCAGGGTATTCCCCAGGAAGTGCTGTACGACAACATGAA AACGGTAGTTGTTGAGCGGGATGCCTATGGCTCCGGAAAACATCGCTTTCACTCCGCATTCCGGCAGTTGGCGACGGACT ACGGCTTCACGCCCCGGCTTTGCAGGCCGTACAGGGCTCGGACAAAAGGCAAAGTCGAGCGTTTCAACCACTATCTGCGA AACAGCTTTTATGTGCCCCTGGTGACAAAGCTCGCCAACTCCGGTCTGAAGCTGGACGCGCTGACTGCCAACCTTGAAGT CGGCAAGTGGCTCCGGGAGGTGGCAAACTGCAGAAAGCACAAGACAACCGGGCAGCGCCCTGACAGGCGGTTCCTCGAGG AGCGAGAGTCGCTTCTGCCGTTGCCGAAAACAATTCGGCAGGACTCTGCCTGCCTTCTGGATGGCACCGGCAAATTGGGA ACATGGCCTGTCGAGATGCTTCAGCGTTCCCCAGCGTTTTATGACCGCTTCCTTCAGGGAGGTGCGTAG Protein sequence : MLTKEGVMEIRILRRQGKSIRWIARELEISRNTVRKYLRDSSEPIYERQTKQPGKLDPFKDYIDERVRQASPHRLPATVI FREIVEQGYAGSERLVRYYVSGLYPVPAPEPDNRFETAPGIQMQVDWCVFRRGKEPLSAFVATLGFSRLTYVEFVTDETF ASLRKCHENAFAFFQGIPQEVLYDNMKTVVVERDAYGSGKHRFHSAFRQLATDYGFTPRLCRPYRARTKGKVERFNHYLR NSFYVPLVTKLANSGLKLDALTANLEVGKWLREVANCRKHKTTGQRPDRRFLEERESLLPLPKTIRQDSACLLDGTGKLG TWPVEMLQRSPAFYDRFLQGGA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAB46599.1 | IS100 transposase | Not tested | HPI | Protein | 4e-78 | 50 |
| y2411 | NP_669718.1 | transposase | Not tested | HPI | Protein | 5e-78 | 50 |
| api83 | CAF28557.1 | transposase | Not tested | YAPI | Protein | 4e-78 | 50 |
| YPTB1585 | YP_070113.1 | transposase | Not tested | HPI | Protein | 5e-78 | 50 |
| unnamed | CAA21403.1 | - | Not tested | HPI | Protein | 5e-78 | 50 |
| y1093 | CAD33720.1 | ORF A protein | Not tested | PAI I 536 | Protein | 7e-78 | 50 |
| s0035 | CAD33773.1 | ORF A protein | Not tested | PAI I 536 | Protein | 5e-78 | 50 |
| y1094 | CAD42088.1 | OrfA protein of IS100 transposase | Not tested | PAI II 536 | Protein | 5e-78 | 50 |
| orfA | CAE85182.1 | OrfA protein, transposase, IS100 | Not tested | PAI V 536 | Protein | 5e-78 | 50 |
| y1094 | CAC43410.1 | IS100 transposase; transposase ORFA | Not tested | PAI III 536 | Protein | 5e-78 | 50 |
| y1093 | YP_002346890.1 | transposase for insertion sequence IS100 | Not tested | HPI | Protein | 5e-78 | 50 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Dde_3407 | YP_389895.1 | integrase catalytic subunit | VFG1607 | Protein | 3e-78 | 50 |
| Dde_3407 | YP_389895.1 | integrase catalytic subunit | VFG1461 | Protein | 4e-78 | 50 |
| Dde_3407 | YP_389895.1 | integrase catalytic subunit | VFG1514 | Protein | 3e-78 | 50 |
| Dde_3407 | YP_389895.1 | integrase catalytic subunit | VFG1626 | Protein | 3e-78 | 50 |
