|
Name : Dde_3187 (Dde_3187) Accession : YP_389676.1 Strain : Desulfovibrio alaskensis G20 Genome accession: NC_007519 Putative virulence/resistance : Virulence Product : nucleotide sugar dehydrogenase Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG0677 EC number : - Position : 3174504 - 3175817 bp Length : 1314 bp Strand : + Note : TIGRFAM: Nucleotide sugar dehydrogenase; KEGG: dvl:Dvul_0210 UDP-glucose/GDP-mannose dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase, N-terminal; UDP-glucose/GDP-mannose dehydrogenase, C-terminal; UDP-glucose/GDP-mannose dehydrogenase, dimerisa DNA sequence : ATGATCAGGTTTGAAGAACTTACCGACGCAAATGCCGCCGTGGCCGTTGTGGGTCTCGGCTATGTTGGGCTGCCTCTTGC CGTGGCCTTAAGCGAACACTTCCGCGTGATCGGCTTTGACATTTCGCAACGCCGCGTGGATGCCCTCATCAAAGGTGAAG ACGCCACAGGCGAAGTGGAAAATTCCCGGCTGGCGGCGTGCAAGGCAGAATTTACCGCAGACCCCGCGCGCATAGGTCAG GCGGACATTGTCATCGTGGCCGTGCCCACGCCCATCGACGGCAATCGCCGGCCCGATCTTTTTCCGGTGGAAAGCGCCTC ACGCACTGTGGGCCGCACCATGAAAAAAGGCTGCGTGGTGGTATACGAATCCACGGTATACCCCGGCCTTACCGAAGAAA TCTGCGTGCCCATTCTTGAAAAAGAATCGGGCATGAAATTCGGCACCGACTTCACCGTGGGCTATTCGCCCGAGCGCATC AATCCGGGCGACAAAGTTCACACCCTCGAAACCATCGTCAAGGTTGTTTCCGGCAGCGATGAAGCCACGGCGGACCTGCT GCAGCGCATGTACGGCACAGTGGTCACCGCCGGAACATTCCGCGCATCCAGCATCCGCGTTGCCGAGGCAGCAAAGGTCA TCGAAAACACCCAGAGAGACCTGAACATCGCTCTTATGAACGAACTGGCGCTGCTGTTCGACCGCATGGACATCGACACG CTGGAAGTGCTTGAAGCAGCCGGCACCAAATGGAATTTCCTGCCGTTCCGTCCCGGTCTCGTGGGCGGCCACTGCATCGG CGTCGACCCGTACTATCTCACCTTCAAGGCCGAAGCGCTGGGACACCACCCGCAGGTCATTCTTGCCGGACGCCGCATCA ATGACGGCATGGGCAAATTCGTGGCCGAAACCTGCGTGAAAAAAATGATCCGCAAAGGCAACGTGGTGGCCGGTTCCCGC GTGGGCGTGCTGGGGCTTACCTTTAAGGAAAACGTACCCGACCTGCGCAACACCCGCGTGGTGGACGTGATTGACGAACT GCGCGACTACGGCGTGCATGTGCTGGTGCACGACCCGCAGGCCGACCCCGCGGAAGCCCACGAAGAATACGGCCTGACCC TGACCGGTCTGGACACCCTGCGCGAGCTGGATGCTGTTATTCTGGCCGTACCGCACGCGGAATACGACGCACTGCAGGCA CAGGATATCCGCGGCTGGTTCCGCGATCCGCAAAAAGCCCTGCTGCTGGATATCAAAGGCGCAAAGTCGCCCGCCGCGTT CACTGACGCCGGTTTTGACTACTGGCGCCTGTAA Protein sequence : MIRFEELTDANAAVAVVGLGYVGLPLAVALSEHFRVIGFDISQRRVDALIKGEDATGEVENSRLAACKAEFTADPARIGQ ADIVIVAVPTPIDGNRRPDLFPVESASRTVGRTMKKGCVVVYESTVYPGLTEEICVPILEKESGMKFGTDFTVGYSPERI NPGDKVHTLETIVKVVSGSDEATADLLQRMYGTVVTAGTFRASSIRVAEAAKVIENTQRDLNIALMNELALLFDRMDIDT LEVLEAAGTKWNFLPFRPGLVGGHCIGVDPYYLTFKAEALGHHPQVILAGRRINDGMGKFVAETCVKKMIRKGNVVAGSR VGVLGLTFKENVPDLRNTRVVDVIDELRDYGVHVLVHDPQADPAEAHEEYGLTLTGLDTLRELDAVILAVPHAEYDALQA QDIRGWFRDPQKALLLDIKGAKSPAAFTDAGFDYWRL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| cap1L | AAA64651.1 | type 1 capsule synthesis gene | Virulence | SCCcap1 | Protein | 1e-103 | 56 |
| tviB | NP_807945.1 | VI polysaccharide biosynthesis UDP-glucose/GDP-mannose dehydrogenase | Virulence | SPI-7 | Protein | 8e-94 | 53 |
| tviB | NP_458740.1 | Vi polysaccharide biosynthesis protein, UDP-glucose/GDP-mannose dehydrogenase | Virulence | SPI-7 | Protein | 8e-94 | 53 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Dde_3187 | YP_389676.1 | nucleotide sugar dehydrogenase | VFG0431 | Protein | 3e-94 | 53 |
