Gene Information

Name : Dde_1550 (Dde_1550)
Accession : YP_388042.1
Strain : Desulfovibrio alaskensis G20
Genome accession: NC_007519
Putative virulence/resistance : Virulence
Product : TRAP dicarboxylate transporter subunit DctM
Function : -
COG functional category : G : Carbohydrate transport and metabolism
COG ID : COG1593
EC number : -
Position : 1568503 - 1569786 bp
Length : 1284 bp
Strand : +
Note : KEGG: ant:Arnit_0953 TRAP dicarboxylate transporter subunit DctM; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit

DNA sequence : 
ATGAGCATTCTTTTGCTGCTTGTCTTTTTTGCCATGCTGGCATCGGGGCTGCCGCTGTTTGTGGCCATGCTGTGTACAGC
ACTGGCCGGGTTTGCCTACATCGGCGAGTCCGGTCAACTGCGGCTGATGGTGCAGCAGTTTTATGGCGGCATGGAACCTT
TTTCCCTGCTGGCCATACCGTACTTTATTCTGGTGGGCGAACTGATGGGCTGCGCCGGACTGACCAGCAGACTGTTGCGT
TTTGCCGAGGCTCTTGTGGGACACCTCAAGGGCGGACTGGGCTATGTGACAGTGGTGGCCAGCATCATTTTTGCCGGTGT
CAACGGCTCTGCCGCGGCGGATGCGTCCGCAGTAGGCTCCATCATGATTCCCGCCATGAAAAAAGGCGGATACCCCGACT
CGTATGCCGCGGGCCTTACTGCCGGCAGTTCGCTTATCGGTCCCATCATTCCGCCGAGCATTTTTATGATTTTGTTCGGC
GCCATGACAAAGACGAATGTGGGCGGGCTGTTTATGGCGGGTGTGGTGCCGGGGTTGCTGCTTGGTGTCGCTTTTATGGT
CATGCACCGCATCAGTGCCGCGCGGCTCAACCTGCCTACGGTCAATACGGCCTTTTCCATGCCTGATCTCTGGAGGGCCA
CCGGCGGAGCCATGGCTGCGCTCATTGCTCCGGGTATCATTATCGGCGGTATCCTGTTCGGGTTCATGACCCCCACCGAG
TCCGGTGCCATAGCCAGTCTGTATGTGGTCATCGTGGGCTTTGTCTGGACACGGCAGCTGACGGTGAAGGGCGTGCTGCT
GGCGTTGTCGAACACGGTCCGGCTTACCAGTGTCATTTTTGTGGTTATCGGGGCGGCGACTATTGTCGGCTGGATTCTGT
CTGCCGAAAAAGTACCGCAGTCCATGGCTCCGGTGATCATGAGTTATGCCTCGAGTCCTGAACAGGTTCTGCTGCTGATA
AGCCTGATTGTGTTTGTGGTGGGCATGTTCATGGAAGAAATTGCGGCTCTGGTGCTGCTTACTCCGGTGTTCGCGCCGCT
GGCTGTGGCGGCGGGAATTGATCCGTATCATTTCGGCATCGTGATGACACTGAACATCACCATTGCGCTTATCACTCCGC
CCATGGGAGCCTGCGTGTACATCGTATCCTCCGTGGGCAATGTGTCGCTGGAAAAAATGTTCAGGCACATCTGGCCGTTT
GTTCTGGTGGCGCTGGCCTGTCAGCTGCTGCTGATTTTTGTTCCCGGGATATCTGTCTGGCTGCCGCATATGCTGGGCTA
TTAA

Protein sequence : 
MSILLLLVFFAMLASGLPLFVAMLCTALAGFAYIGESGQLRLMVQQFYGGMEPFSLLAIPYFILVGELMGCAGLTSRLLR
FAEALVGHLKGGLGYVTVVASIIFAGVNGSAAADASAVGSIMIPAMKKGGYPDSYAAGLTAGSSLIGPIIPPSIFMILFG
AMTKTNVGGLFMAGVVPGLLLGVAFMVMHRISAARLNLPTVNTAFSMPDLWRATGGAMAALIAPGIIIGGILFGFMTPTE
SGAIASLYVVIVGFVWTRQLTVKGVLLALSNTVRLTSVIFVVIGAATIVGWILSAEKVPQSMAPVIMSYASSPEQVLLLI
SLIVFVVGMFMEEIAALVLLTPVFAPLAVAAGIDPYHFGIVMTLNITIALITPPMGACVYIVSSVGNVSLEKMFRHIWPF
VLVALACQLLLIFVPGISVWLPHMLGY

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC1777 NP_231412.1 hypothetical protein Not tested VPI-2 Protein 5e-40 41
VC0395_A1375 YP_001217318.1 hypothetical protein Not tested VPI-2 Protein 5e-40 41
VPI2_0025c ACA01842.1 TRAP dicarboxylate transporter DctM subunit Not tested VPI-2 Protein 4e-40 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Dde_1550 YP_388042.1 TRAP dicarboxylate transporter subunit DctM VFG1110 Protein 2e-40 41