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Name : Dde_1409 (Dde_1409) Accession : YP_387903.2 Strain : Desulfovibrio alaskensis G20 Genome accession: NC_007519 Putative virulence/resistance : Unknown Product : replicative DNA helicase Function : - COG functional category : L : Replication, recombination and repair COG ID : COG0305 EC number : - Position : 1427543 - 1429024 bp Length : 1482 bp Strand : - Note : KEGG: dvu:DVU0959 replicative DNA helicase; TIGRFAM: DNA helicase, DnaB type; PFAM: DNA helicase, DnaB-like, C-terminal; DNA helicase, DnaB-like, N-terminal DNA sequence : ATGCAGAAGAATCCGCAGCAGAAGAACCCGCAGTGGAAGAAGCCGCAGAATAGCACAGCCTTTCAGGGAAACGCTCCCGC CCGCACGGGCGGGGGCGGTCCCTTCGGGCAGGTGGATCAGGTTTCTGACGACCTGCTGCGTAACGTTCCCCCCCACAGTG TAGAGGCTGAACAGGCCGTGCTCGGGGGGGTTTTTTTACGCGGACAGGTATTCCACACGCTGGTTGATATCGTTAATGAA GACGACTTTTATCTTCCCGCTCACAAGACCATCTTTGAATCGTTTTCCGAGCTGTACCGCCGCAACTCACCCATTGATCT CATCACTGTAGCTGAATTTCTGAAAGATCAGGGTAAACTGGAGATGGCGGGCGGCACCGTGTATCTGGCAGAGCTGGCCG AATCGGTCATCAGCGCCGCCAACGCGGAACACTATGCCACGCTTGTGCGCAACAAGTCGCTGCAGCGCTCTCTCATCGGT GCCTGCAGCGATATAATCAGCAACTGCTACGATGCGTCACAGGACATCGAGCAGTTGCTCGACCATTCCGAATCATCCAT TTTTTCCATTTCCGAAAGGACCACGGGCAAAGTTTTCAAAAGCTCCAAGGAACTGGTCAGCAAGGTTTTTGAAGATCTGG AAAAACGGGTGGAACGCAAGGAGCTTGTCACCGGGGTAACCACAGGATACTTCCGGCTGGACAGCATGACGGCAGGCCTT CAGCCTTCTGACCTTATCATCATTGCGGCGCGTCCTTCCATGGGCAAGACCGCTTTTGTGCTGAACATGGCCATGCGTGC CGCCGTCAATGCGGGAACGCCCGTCGCCATTTATTCGCTGGAAATGTCCATGGAATCGCTCATGATGCGTATGTTATGCG CATGGGGCAAGGTTGATCTGGGCAAGCTGCGTAAAGGATTTCTGGACGACGAGGACTGGGCAAAGCTGTATGCTGCCGCA GACGTGCTTTCACGCGCGCCCATCTACATCGACGATACTCCGGCCATCACCACGCTGGATCTGCGTGCCCGTACCCGCCG CCTGCATGCCGACAAAGGCGTCGGCATGGTTGTTGTCGACTACCTGCAGCTTATGCGTTCCAGCCGCAGAACAGATTCAC GCGAACTGGAAATTTCCGATATATCCCGAAACCTCAAAGCGCTGGCCAAGGAACTCAATATTCCCGTCATTGCGCTTTCC CAGCTCAACCGTAAAGTGGAAGAACGCACCAACAAGCGTCCCATGCTCTCCGACCTTCGCGAATCGGGCGCTATTGAGCA GGATGCCGACATCATCATGTTTGTCTATCGCGACGAGGTATATAACAAACGGGATGACAACCCCAAAAAGGGGGTTGCCG AAATCATCATCGGCAAACAGCGTAACGGACCAACCGGCATGGCAGAGCTTGCCTACATAGGGTCATACACGGCCTTTGAA GATCTGGCCGAAGTGCCTCCGCCCTCAGAAGAATTCCAGTAA Protein sequence : MQKNPQQKNPQWKKPQNSTAFQGNAPARTGGGGPFGQVDQVSDDLLRNVPPHSVEAEQAVLGGVFLRGQVFHTLVDIVNE DDFYLPAHKTIFESFSELYRRNSPIDLITVAEFLKDQGKLEMAGGTVYLAELAESVISAANAEHYATLVRNKSLQRSLIG ACSDIISNCYDASQDIEQLLDHSESSIFSISERTTGKVFKSSKELVSKVFEDLEKRVERKELVTGVTTGYFRLDSMTAGL QPSDLIIIAARPSMGKTAFVLNMAMRAAVNAGTPVAIYSLEMSMESLMMRMLCAWGKVDLGKLRKGFLDDEDWAKLYAAA DVLSRAPIYIDDTPAITTLDLRARTRRLHADKGVGMVVVDYLQLMRSSRRTDSRELEISDISRNLKALAKELNIPVIALS QLNRKVEERTNKRPMLSDLRESGAIEQDADIIMFVYRDEVYNKRDDNPKKGVAEIIIGKQRNGPTGMAELAYIGSYTAFE DLAEVPPPSEEFQ |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | ABR13456.1 | replicative DNA helicase | Not tested | PAGI-5 | Protein | 2e-68 | 45 |
| dnaB2 | YP_001402701.1 | replicative DNA helicase | Not tested | YAPI | Protein | 2e-73 | 44 |
| api2 | CAF28476.1 | putative DNA binding protein with DNA-dependent ATPase activity | Not tested | YAPI | Protein | 9e-74 | 44 |
| PMI2640 | YP_002152342.1 | DNA helicase | Not tested | Not named | Protein | 3e-67 | 44 |
| dnaB2 | YP_001007676.1 | putative DNA helicase | Not tested | YAPI | Protein | 3e-65 | 43 |
| dnaB | CAI36044.1 | replicative DNA helicase DnaB | Not tested | PPHGI-1 | Protein | 9e-60 | 41 |
| STY4522 | NP_458617.1 | DNA helicase | Not tested | SPI-7 | Protein | 7e-59 | 41 |
| t4227 | NP_807829.1 | DNA helicase | Not tested | SPI-7 | Protein | 7e-59 | 41 |
