|
Name : join (Dde_1397) Accession : YP_387891.2 Strain : Desulfovibrio alaskensis G20 Genome accession: NC_007519 Putative virulence/resistance : Unknown Product : integrase catalytic subunit, ISDde3 Function : - COG functional category : L : Replication, recombination and repair COG ID : COG2801 EC number : - Position : 1412821 - 1414004 bp Length : 1184 bp Strand : - Note : PFAM: Integrase, catalytic core; Transposase IS3/IS911; KEGG: dps:DP1714 transposase DNA sequence : ATGAGTAGCCCAAAACGTCGCACTTATGATTCAGAATTCAAACAAAACGCCGTGTTATTAACAGAAGACCCCAGCCGCAC AGTAACCGAGGTTGCTGAAAGTCTGGGAGTTGCGAAAGACCTTCTTTATCGGTGGCGAAGAGAATTCGCAGCGCAAGGTA AGGTGGCCTTTTCAGGCCGAGGGAATCCGGCCCTCACAGATGAACAGCGCCGTATTCGGGAACTGGAAAAGAAGCTTAAA AATGCAGAATTGGAGCGGGATATTTTAAAAAAAGCCTTGGCCATCTTCAGCAGCGCACCGAAATAAAATTTCAAATTATC AAAAATTGCCGCTCGTTATTTCCGGTGAAGAAGATGTGCCATATGCTCGGGGTTTCCCAGAGCGGCTTTTACTCGTGGGC GACTCGTCCCCCGTCTCAAAGGGCAAGGCATAATGCTCAATTGCGCGTCCGTATCAGAGAATTGTTCGAGGAACACAAAA GAACAGCTGGAAGTCCGATGATTACAGAAGACTTACGGGCTGAAGACGCTTTTCGGCATGTTAGTAGATCTCGGGTGGCT AGGCACATGCGGGAAATGGGGTTGCGCTGCCAGACCATGAAGAAGTTTGTTGTCACGACCGACTCCTCTCACTCTGAGCC TGTTGCCCCGAATGTCCTGAATCGGCGGTTTTCTGCCTCAGCTCCAAACGTCACGTGGGTCAGCGACATTACTTACATAA AAATAGGCAGAACGTGGCATTACCTGACGGTATTCATCGACCTGTATTCCCGCTTAGTTGTGGGGTGGGATCTCAGTGCA TCGCTGGAGCGGCATTCTGTTATTCACGCGTTTCGGAAAGCAGTGGCCCGTCGAAGGCCTTCAAAAGGGTTGCTTGTCCA TAGCGATCGTGGAATCCAATATGCCAGTAGGGATTTCAGAAAGGAATTACACCGACATGGCTGTATTCAAAGCATGAGTC GAAAAGGCAACTGTTGGGACAATGCCGTTGCTGAATCATTCTTCCATACCCTGAAAACCCAGTTGATCTATCAAAGGAAA TTTACAGACAGGCGTGAAGCAGAGCTTGCTCTCTTCCATTACATAGAGGCGTATTACAATCGTCGTCGGAGGCATTCCAG TAACGGTTGGATGTCTCCTGCGGCTTTCGAAAATTTCAACCAGGAATACAAAAAAGTAGCTTAA Protein sequence : MSSPKRRTYDSEFKQNAVLLTEDPSRTVTEVAESLGVAKDLLYRWRREFAAQGKVAFSGRGNPALTDEQRRIRELEKKLK NAELERDILKKSLGHLQQRTEIKFQIIKNCRSLFPVKKMCHMLGVSQSGFYSWATRPPSQRARHNAQLRVRIRELFEEHK RTAGSPMITEDLRAEDAFRHVSRSRVARHMREMGLRCQTMKKFVVTTDSSHSEPVAPNVLNRRFSASAPNVTWVSDITYI KIGRTWHYLTVFIDLYSRLVVGWDLSASLERHSVIHAFRKAVARRRPSKGLLVHSDRGIQYASRDFRKELHRHGCIQSMS RKGNCWDNAVAESFFHTLKTQLIYQRKFTDRREAELALFHYIEAYYNRRRRHSSNGWMSPAAFENFNQEYKKVA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| tnpA1133 | ACK44540.1 | TnpA | Not tested | SGI1 | Protein | 1e-50 | 43 |
| orfB | AGK07032.1 | IS1133 transposase; OrfB | Not tested | SGI1 | Protein | 1e-50 | 43 |
| orfB | AGK07090.1 | IS1133 transposase; OrfB | Not tested | SGI1 | Protein | 1e-50 | 43 |
