|
Name : Dde_1365 (Dde_1365) Accession : YP_387861.2 Strain : Desulfovibrio alaskensis G20 Genome accession: NC_007519 Putative virulence/resistance : Virulence Product : lysyl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : - Position : 1383408 - 1384991 bp Length : 1584 bp Strand : + Note : PFAM: Aminoacyl-tRNA synthetase, class II (D/K/N); Nucleic acid binding, OB-fold, tRNA/helicase-type; TIGRFAM: Lysyl-tRNA synthetase, class II; HAMAP: Lysyl-tRNA synthetase; KEGG: dvu:DVU2376 lysyl-tRNA synthetase DNA sequence : TTGAGTAATCAAGAATCCTCAAACCGCAAAAAGATCAAGCTTCCCACCAAGTCCGAGCATTCCGCTTACTTTATGCCCAT GCTTACGAGGCTTGATGAGCGTGACGAACTGAACGAAGTCATCAAGAGCCGTGTTGCCAAGTCCTGTGACATGATGGACG CAGGGGTGCCCCTGTTTCCCAACAGGTTCAACAAAGAAATTGATGTCGCTGAAATTCAGGCAGGCTATGAAGGTCTGGAA GCCGAAGAACTGGAAACTCTGGATCAGGAGTTCAGCTGCGCCGGGCGTATCGTGTCCCAGCGTTCCTTCGGCAAGGTTAC CTTTTTCCACCTGCTTGATAAAAGCGGCAAAATGCAGTGCTACGCTTCGCGGGATTCGCTGGGAGCCGATGCCTACAGCG TTTTTAAAAAATTTGACATAGGCGACATTGTGGGCGTGTGCGGTACGCTGTTCCGCACCAAAACGGGCGAGCTGACCATA CAGTGTTCTTCCGTGCAGCTGCTTACCAAGTCCATCCGCCCCCTGCCGGAAAAGTACCACGGGCTGAAAGACGTGGAAAC CCGCTACCGTCAGCGCTATGTGGACCTGATAGTCACCCCGCGTACCCGCGAGATATTCCGCAAACGCGGCCAGATTGTGC GTGAATTCCGCAATTTTATGGAAGAACGCGGGTTCATGGAAGTGGAAACACCCATGATGCAGCCCATTCCGGGCGGCGCC ACGGCAAAGCCTTTTGTCACGCATCACAATGCGCTTGATATGCAGCTGTACATGCGCATTGCGCCGGAGCTGTACCTGAA GCGTCTGCTGGTGGGCGGCTTTGAAAAAGTGTTCGAAATCAACCGCAACTTCCGTAACGAAGGGATTTCCACCCAACATA ATCCCGAATTCACCATGTGTGAGTTTTACTGGGCATATGCCCGCTTTGAAGATCTGATGGATCTGACGGAACAGTTGTTT TCGCGTCTGGCGCAAAAGGTCTGCGGCAGCACCGTTATTACCTATCAGGGGCAGGAAGTGGACCTGACGCCCGGCAAGTG GCAGCGGATGACATTCCATGACTCGCTGGAAAAAGTCGGCGGACACGCGCCGGAATTTTACAACGATTACGAAAAGCTGT CCGCATATATCCGCGAACGGGGCGAAAAGGTCATCGAAGGCGAAAAGCTGGGCAAGCTGCAGGCAAAGCTTTTTGATCTG GATGTGGAATACAAGCTTATCCAGCCGCATTTCATCTATCATTACCCCACTGATATCTCGCCGCTTTCGCGCCGGAATGA TGACAATCCTGACGTGACTGACCGTTTCGAGCTGTTTATAACGGGCAGAGAACTGGCCAATGCGTTCTCGGAACTGAATG ACCCCGTTGACCAGCGCAAGCGTTTTGACGATCAGGTGGCGGAAAAAGAAGCCGGCGATGATGAAGCGCACTTTATGGAT GAAGACTACCTGCGTGCGCTTGAATACGGTATGCCTCCTGCCGCAGGGCAGGGCGTGGGCATTGACCGTCTGGTCATGCT GCTCACGGATTCGGCTTCCATCCGCGAGGTTATCCTCTTCCCGCTGCTTAAGCTGGAGAGCTGA Protein sequence : MSNQESSNRKKIKLPTKSEHSAYFMPMLTRLDERDELNEVIKSRVAKSCDMMDAGVPLFPNRFNKEIDVAEIQAGYEGLE AEELETLDQEFSCAGRIVSQRSFGKVTFFHLLDKSGKMQCYASRDSLGADAYSVFKKFDIGDIVGVCGTLFRTKTGELTI QCSSVQLLTKSIRPLPEKYHGLKDVETRYRQRYVDLIVTPRTREIFRKRGQIVREFRNFMEERGFMEVETPMMQPIPGGA TAKPFVTHHNALDMQLYMRIAPELYLKRLLVGGFEKVFEINRNFRNEGISTQHNPEFTMCEFYWAYARFEDLMDLTEQLF SRLAQKVCGSTVITYQGQEVDLTPGKWQRMTFHDSLEKVGGHAPEFYNDYEKLSAYIRERGEKVIEGEKLGKLQAKLFDL DVEYKLIQPHFIYHYPTDISPLSRRNDDNPDVTDRFELFITGRELANAFSELNDPVDQRKRFDDQVAEKEAGDDEAHFMD EDYLRALEYGMPPAAGQGVGIDRLVMLLTDSASIREVILFPLLKLES |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 5e-111 | 54 |
| lysS | YP_005163386.1 | lysyl-tRNA synthetase | Not tested | Not named | Protein | 4e-75 | 42 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Dde_1365 | YP_387861.2 | lysyl-tRNA synthetase | VFG1668 | Protein | 3e-111 | 54 |
