Gene Information

Name : Gmet_0812 (Gmet_0812)
Accession : YP_006719777.1
Strain : Geobacter metallireducens GS-15
Genome accession: NC_007517
Putative virulence/resistance : Virulence
Product : sigma-54-dependent transcriptional response regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 894240 - 895601 bp
Length : 1362 bp
Strand : -
Note : 'domains: REC, sigma54 interaction, HTH8'

DNA sequence : 
ATGAAAGAACGGACCCGCATCCTCCTCATCGATGACGAAGAATCGGGGCGCGAAGCTCTCACCCTCATCCTCAGGAATGC
CGGCCACCACGTCACGGGGGCGGCATCGGGGCGGGAAGCGGCCCAGCACCTTGCTCGGGACAAGTTCGACATCATCATTA
CCGACCTCTTCCTTCCCGACACCAACGGCATTGACATCCTCAAGGACGTCAAGAACGATTCCCCCCTCACCGAGGTGATC
CTCATCACCGGCCACGCCTCCGCCGAAACCGCCGTGCGGGCCATGAAAGAGGGGGCCTACGACTACATCACCAAGCCCCT
CAACATCGACGAACTCAGGATCATCATCGCCAAGGCCGTGGAGAAGCACCAGCTCCTCTCCGAAAACGTCTACCTCAGGA
AACAGCTCCGGGACAAATTCGAGTTCGCCAACATCATCGGCGCCTCGCCTGCCATGCAGCAGGTCTTCGCCCTCATGAAG
CGGATCGTCAAGACCGACTCCACGGTCCTCATCGCCGGCGAGTCGGGGACCGGTAAGGAAATCGTGGCCAAGGCGATCCA
TTTCAACGGCTCACGGCGCGAGCGGCCGTTCATCGCCGTCCACTGCGGCGCCATACCGGAGAATCTCCTGGAGTCGGAAC
TGTTCGGCTACGTGAAGGGGGCTTTCACCGGCGCGGTGAGGGACAAGATCGGCAAGTTCGAGGCGGCCAACGGCGGTACC
ATCTTCCTGGACGAGATCGGGACCATGCCGCTGCAGCTCCAGACAAAGCTCCTGCGGGTCCTGCAGGAGCAGGAGGTGGA
GCGGGTCGGTTCCACCCGTCCCATCAAGATCGACGTGCGGATCATCTCGGCCACCAACCTGGACCTGGCCGAGGAAGTGA
AGAAGGGGACCTTCCGCGAAGACCTCTACTACCGGCTCAACGTCATCCCCCTGGGCCTGCCGCCGCTCCGGGACCGGGTC
GAGGACATCCTCCCCCTGGCGAAGCACTTTCTCGCCAAGTACTGCAAAGAGATGCAGCGCCGCCGGATGACCCTCGCCAC
GGAAGCGGTGGAGGCCCTTGAAGGGTATCGATGGGGAGGGAACGTGAGGGAACTGGAGAACGTCATGGAGCGGGTCGTGG
CCCTCACCGAGGCGGACACCATCACCCTCCACGACCTCCCCCCCAACATCCGCGAGGAATCCCTCACTCGGGTCACCGAA
CGGGGTGTCGACCTCGTGAAAGTGATCGCCGAAATCGAGCGGAGCATGATCACCGACGCCCTGGCCCTCACCGACGGTGT
CAAGGCCCGGGCCGCGGCGCTCCTGAACCTGAACCGGACCACCCTCGTGGAAAAGATGCGCCGGCTCGGCATGCCGCTGT
AA

Protein sequence : 
MKERTRILLIDDEESGREALTLILRNAGHHVTGAASGREAAQHLARDKFDIIITDLFLPDTNGIDILKDVKNDSPLTEVI
LITGHASAETAVRAMKEGAYDYITKPLNIDELRIIIAKAVEKHQLLSENVYLRKQLRDKFEFANIIGASPAMQQVFALMK
RIVKTDSTVLIAGESGTGKEIVAKAIHFNGSRRERPFIAVHCGAIPENLLESELFGYVKGAFTGAVRDKIGKFEAANGGT
IFLDEIGTMPLQLQTKLLRVLQEQEVERVGSTRPIKIDVRIISATNLDLAEEVKKGTFREDLYYRLNVIPLGLPPLRDRV
EDILPLAKHFLAKYCKEMQRRRMTLATEAVEALEGYRWGGNVRELENVMERVVALTEADTITLHDLPPNIREESLTRVTE
RGVDLVKVIAEIERSMITDALALTDGVKARAAALLNLNRTTLVEKMRRLGMPL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 2e-66 41
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 2e-66 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Gmet_0812 YP_006719777.1 sigma-54-dependent transcriptional response regulator BAC0089 Protein 1e-93 50
Gmet_0812 YP_006719777.1 sigma-54-dependent transcriptional response regulator BAC0467 Protein 2e-78 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Gmet_0812 YP_006719777.1 sigma-54-dependent transcriptional response regulator VFG1249 Protein 1e-76 45
Gmet_0812 YP_006719777.1 sigma-54-dependent transcriptional response regulator VFG0116 Protein 9e-73 44
Gmet_0812 YP_006719777.1 sigma-54-dependent transcriptional response regulator VFG1214 Protein 3e-75 43