Gene Information

Name : czcR (Gmet_0528)
Accession : YP_006719491.1
Strain : Geobacter metallireducens GS-15
Genome accession: NC_007517
Putative virulence/resistance : Virulence
Product : winged-helix heavy metal transcriptional response regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 567005 - 567676 bp
Length : 672 bp
Strand : -
Note : 'domains: REC, trans_reg_C'

DNA sequence : 
ATGCGCATCCTGATCATAGAAGACGAGAAAAAGGCCGCCGCGTATCTTCAGAAAGGATTCACTGAGAACGGCTTTTCGGC
GGACACGGCCCAAAACGGCGAGGATGGTCTCCACCTGGCCCGTACCGAGGCCTACGACCTCGTCATCCTCGACATCATGC
TCCCCGGCCGGGATGGCTGGTCGGTGCTGGAAGAGCTGCGGCGCGGGGGGAGCGAGGTGCCGGTCATCTACCTGTCGGCC
CGGGACGCGGTCCAGGACCGGGTGCGAGGGCTGGAGCTGGGGGCCGACGACTACCTGGTGAAACCCTTCGCCTTTTCGGA
ACTGCTGGCCCGGGCCCGCAACATCCTCCGCCGGGGACCGGCACGGCAGCCGGAACGCCTGCGGGTCGACGATCTGGAAA
TGGACCTGGTGGGCCACAAGGCCTGGCGGGGAGGGACCCCCCTCGACCTCACCACCAAGGAGTTTCTCCTCCTGTCGCTC
CTGCTCCGCCGCAAGGGGGAGGTCCTCTCCCGAGCCCTCATCGCCGACCAGGTCTGGGGCATAAACTTCGACAGCGACAC
CAATATCGTCGACGTGGCAATCCGCCGCCTGCGGCGCAAGGTCGACGACCCCTTCGAGCGAAAGCTGATAAGTACCGTCC
GCGGAGCAGGCTATGTCCTCGACGGAGCGTGA

Protein sequence : 
MRILIIEDEKKAAAYLQKGFTENGFSADTAQNGEDGLHLARTEAYDLVILDIMLPGRDGWSVLEELRRGGSEVPVIYLSA
RDAVQDRVRGLELGADDYLVKPFAFSELLARARNILRRGPARQPERLRVDDLEMDLVGHKAWRGGTPLDLTTKEFLLLSL
LLRRKGEVLSRALIADQVWGINFDSDTNIVDVAIRRLRRKVDDPFERKLISTVRGAGYVLDGA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 2e-48 59
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 1e-47 57

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
czcR YP_006719491.1 winged-helix heavy metal transcriptional response regulator BAC0197 Protein 1e-55 65
czcR YP_006719491.1 winged-helix heavy metal transcriptional response regulator BAC0125 Protein 2e-59 63
czcR YP_006719491.1 winged-helix heavy metal transcriptional response regulator BAC0083 Protein 1e-52 59
czcR YP_006719491.1 winged-helix heavy metal transcriptional response regulator BAC0111 Protein 6e-53 59
czcR YP_006719491.1 winged-helix heavy metal transcriptional response regulator BAC0638 Protein 1e-54 59
czcR YP_006719491.1 winged-helix heavy metal transcriptional response regulator BAC0308 Protein 4e-50 56
czcR YP_006719491.1 winged-helix heavy metal transcriptional response regulator BAC0347 Protein 4e-48 55
czcR YP_006719491.1 winged-helix heavy metal transcriptional response regulator NC_010079.5776364.p0 Protein 7e-31 44
czcR YP_006719491.1 winged-helix heavy metal transcriptional response regulator NC_002952.2859858.p0 Protein 7e-31 44
czcR YP_006719491.1 winged-helix heavy metal transcriptional response regulator NC_007622.3794948.p0 Protein 7e-31 44
czcR YP_006719491.1 winged-helix heavy metal transcriptional response regulator NC_003923.1003417.p0 Protein 7e-31 44
czcR YP_006719491.1 winged-helix heavy metal transcriptional response regulator NC_013450.8614146.p0 Protein 7e-31 44
czcR YP_006719491.1 winged-helix heavy metal transcriptional response regulator NC_002951.3238224.p0 Protein 7e-31 44
czcR YP_006719491.1 winged-helix heavy metal transcriptional response regulator NC_007793.3914065.p0 Protein 7e-31 44
czcR YP_006719491.1 winged-helix heavy metal transcriptional response regulator NC_002758.1121390.p0 Protein 7e-31 44
czcR YP_006719491.1 winged-helix heavy metal transcriptional response regulator AE000516.2.gene3505. Protein 2e-22 42
czcR YP_006719491.1 winged-helix heavy metal transcriptional response regulator AE015929.1.gene1106. Protein 1e-25 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
czcR YP_006719491.1 winged-helix heavy metal transcriptional response regulator VFG0596 Protein 6e-49 59
czcR YP_006719491.1 winged-helix heavy metal transcriptional response regulator VFG1389 Protein 8e-30 47
czcR YP_006719491.1 winged-helix heavy metal transcriptional response regulator VFG1386 Protein 1e-33 43
czcR YP_006719491.1 winged-helix heavy metal transcriptional response regulator VFG1390 Protein 3e-32 41