Gene Information

Name : Gmet_3006 (Gmet_3006)
Accession : YP_006721960.1
Strain : Geobacter metallireducens GS-15
Genome accession: NC_007517
Putative virulence/resistance : Unknown
Product : integron integrase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3390705 - 3391709 bp
Length : 1005 bp
Strand : +
Note : -

DNA sequence : 
ATGCACCCCATCAACATGGGCAAAAACGCCTCTGCTGTCGAACCCGAAAAACCCCGCCTCCTGGATATCCTCCGCACCAG
AATCCGCCTCAAACATTACAGCCTCCGCACGGAGCAGACTTACACCGAATGGGCGAAGCGCTACATTCTCTTCCATGGCA
AACGCCATCCCGCCGAGATGGGGAAGGAAGAGGTGGAGGCGTTTCTCTCCCATCTGGCGGTGAAGCACAATGTCTCGGCC
TCGACCCAGAGCCAAGCCCGGGCCGCGATTCTTTTTCTCTACCGCGAGGTACTCGACATTGAACTCCCCTGGCTGGACGA
TGTGGAACAGGCGAAGAAGCCCCAACGGCTGCCGGTGGTGCTGACGGTAAGCGAGGTGCAGGCTCTCCTCTCCCGCCTGA
CCGGAACCCATGCGCTGATGGGGCGACTGATGTACGGTACCGGCATGCGCCTGATGGAGACGGTGCGGCTGCGGGTGAAG
GATGTGGATTTCGAGCGGAGCGAGATCATCGTCCGGGAAGGTAAGGGTGCAAAGGATCGGATCACCATGCTCCCCCAAGC
GGTTGCGGCCCCGCTGCGGGAGCACCTGGGGCGGGTGGAGGCTCTTCACGGGGCGGATTTGAGGGCCGGCTTCGGCGAGG
TCCACCTCCCCCATGCCCTCGGGAAGAAGTACCCGAACGCGGGTCGGGAATGGGGATGGCAGTATGTGTTCCCGGCAAAG
CAGCTTTCGACGGACCCGCGCACGGGGGTAACCCGTCGGCACCACGCTGACGAGAAGGGAATCCAGCGGGCCATCCGTCA
GGCAGTGCGGGACGCGGAGCTTGCCAAGCCAGCCACTCCCCACACGCTACGGCACTCCTTCGCGACGCACCTGCTCCAGT
CGGGCTACGATATCCGCACGGTGCAGGAACTTCTGGGCCACAAGGATGTGCAGACGACGATGATCTACACCCATGTGCTG
AACCGTGGCGGCAAAGGGGTGGAAAGTCCCCTTGATCGGCTGTAG

Protein sequence : 
MHPINMGKNASAVEPEKPRLLDILRTRIRLKHYSLRTEQTYTEWAKRYILFHGKRHPAEMGKEEVEAFLSHLAVKHNVSA
STQSQARAAILFLYREVLDIELPWLDDVEQAKKPQRLPVVLTVSEVQALLSRLTGTHALMGRLMYGTGMRLMETVRLRVK
DVDFERSEIIVREGKGAKDRITMLPQAVAAPLREHLGRVEALHGADLRAGFGEVHLPHALGKKYPNAGREWGWQYVFPAK
QLSTDPRTGVTRRHHADEKGIQRAIRQAVRDAELAKPATPHTLRHSFATHLLQSGYDIRTVQELLGHKDVQTTMIYTHVL
NRGGKGVESPLDRL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
intI CAJ77082.1 Integrase Not tested AbaR1 Protein 5e-85 59
intI1 ACY75520.1 integrase Not tested Tn6060 Protein 4e-84 59
intI1 YP_005797130.1 integrase Not tested AbaR4e Protein 7e-85 59
intI1 AGF35060.1 IntI1 integrase Not tested SGI1 Protein 5e-85 59
intI1 ACY75535.1 integrase Not tested Tn6060 Protein 4e-84 59
intI1 YP_005797145.1 integrase Not tested AbaR4e Protein 7e-85 59
intI1 AGK06930.1 IntI1 integrase Not tested SGI1 Protein 5e-85 59
intI1 AGF34986.1 IntI1 integrase Not tested SGI1 Protein 4e-84 59
intI1 ACN81019.1 IntI1 integrase Not tested AbaR5 Protein 7e-85 59
intI1 AGK06967.1 IntI1 integrase Not tested SGI1 Protein 5e-85 59
intI1 AGF35026.1 IntI1 integrase Not tested SGI1 Protein 4e-84 59
intI1 AGK07013.1 IntI1 integrase Not tested SGI1 Protein 5e-85 59
intI1 CAB46685.1 DNA integrase Not tested Not named Protein 4e-84 59
unnamed AAL08437.1 Tn21 integrase IntI1 Not tested SRL Protein 4e-84 59
intI1 AGK07071.1 IntI1 integrase Not tested SGI1 Protein 5e-85 59
unnamed ACF06155.1 class 1 integrase Not tested Tn5036-like Protein 9e-85 59
intI1 AAK02045.1 integrase Not tested SGI1 Protein 4e-84 59
intI1 AFV53119.1 IntI1 integrase Not tested AbGRI2-1 Protein 5e-85 59
intI1 AGK07098.1 IntI1 integrase Not tested SGI1 Protein 9e-85 59
intI1 ABZ01842.1 IntI1 Not tested SGI2 Protein 4e-84 59
EC042_4092 YP_006098375.1 integrase Not tested Tn2411 Protein 1e-84 59
intI1 ABB48427.1 IntI1 integrase Not tested SGI1 Protein 5e-85 59
intI CAJ77028.1 Integrase Not tested AbaR1 Protein 4e-84 59
intI YP_001844881.1 integrase Not tested AbaR20 Protein 7e-85 59
intI1 AGK36642.1 IntI1 integrase Not tested AbaR26 Protein 5e-85 59
intI1 AFL65913.1 class 1 integrase Not tested SGI1-J6 Protein 8e-68 58
int1 YP_005160012.1 integrase Not tested Not named Protein 7e-73 58

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Gmet_3006 YP_006721960.1 integron integrase VFG1028 Protein 2e-84 59