Gene Information

Name : tssB (Gmet_0278)
Accession : YP_006719241.1
Strain : Geobacter metallireducens GS-15
Genome accession: NC_007517
Putative virulence/resistance : Virulence
Product : type VI secretion system needle sheath protein TssB
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 309957 - 310445 bp
Length : 489 bp
Strand : +
Note : -

DNA sequence : 
ATGTCGAAAGAAGCATCCGTAGCACCGAAGGAACGGGTCAATATCGTCTACCGTCCGGCCTCGGACGGCGCTGCCGAAGA
GGTTGAGCTGCCGCTGAAAATGCTCGTTATGGGGGACTTTACCGGCACCCCCGACGAACGCCCCGTCGAGAAGCGGGACC
CCGTCGCCATCGACAAGGAGACCTTCAACGACGTCATGAAGGCCCAGGGGATCTCCCTGAACATCGCCGTCCCCAACCGG
CTCGCCGGCGAGGCCGGGGACGAGCTGCCGGTGAACCTGAAGGTTGAGTCACTCAAGGACTTCGGCCCCGAGGCGGTGGT
GGAGCAGGTCCCCGAGATGAAGCGGCTCCTGGAGCTGCGGGAGGCCCTGCGGGCCCTCAAGGGGCCGCTTTCCAACGTTC
CCGACTTCCGGAGGAAGATCCAGGAACTGATCACCGACGACGCGGCCCGGGCCAAGCTTCTGGCTGAAATCGGCATCGAG
GAAGGGTAA

Protein sequence : 
MSKEASVAPKERVNIVYRPASDGAAEEVELPLKMLVMGDFTGTPDERPVEKRDPVAIDKETFNDVMKAQGISLNIAVPNR
LAGEAGDELPVNLKVESLKDFGPEAVVEQVPEMKRLLELREALRALKGPLSNVPDFRRKIQELITDDAARAKLLAEIGIE
EG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
HH0248 NP_859779.1 hypothetical protein Not tested HHGI1 Protein 7e-30 50
aec17 YP_851427.1 hypothetical protein Not tested PAI II APEC-O1 Protein 2e-27 44
aec17 AAQ96711.1 Aec17 Not tested AGI-1 Protein 2e-27 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
tssB YP_006719241.1 type VI secretion system needle sheath protein TssB VFG2474 Protein 2e-39 54
tssB YP_006719241.1 type VI secretion system needle sheath protein TssB VFG2092 Protein 8e-37 53