Gene Information

Name : phoB (Gmet_2693)
Accession : YP_006721647.1
Strain : Geobacter metallireducens GS-15
Genome accession: NC_007517
Putative virulence/resistance : Virulence
Product : winged-helix phosphate transcriptional response regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3040555 - 3041235 bp
Length : 681 bp
Strand : +
Note : 'domains: REC, trans_reg_C'

DNA sequence :
ATGCAAACCGTCCTGATCATCGAAGACGAAAAAGACCTGGCGGAACTCGTTTCCTTCAACCTGGAGAAGGAAGGATACCG
GACCATCGCGGCCCCCGATGGCATCAGCGGCCTCGACGAGGCACAGAGGCAGGTCCCGGACCTTATCTTACTCGACCTGA
TGCTCCCGGGCATGATGGGAACCGAGGTCTGCAAGATACTGAAAAAGTCGGAGAAAACCGCGAAAATCCCAGTCATCATG
CTGACGGCCCGGGGAGAAGAGATCGACCGGGTGGTGGGGTTCGAGGTGGGCGCCGACGATTACGTGGTGAAGCCCTTCTC
CACCCGGGAACTGCTCCTGAGGATCAAAGCGGTGCTGCGCCGTTCGCTGCCGGACGAACCCTCGGGAAAAACCATGAGGA
TCGGGCCGATCGCCATCGACCCGGACCGCCACACGGTGGCCGTGGCAGGGGAAGAGATAGTCCTTACCACCACTGAATTC
AAGCTGCTCCTCAATCTCGCCGAACGCCTGGGGCGGGTCCAGAGCCGCGACCTTCTCCTGAAAAACGTCTGGGGATACAA
CTACGTGGGGGACACCCGCACGGTTGACACGCACATCACTCGTCTGCGCACGAAGCTGGGCCCGGCCGGCGACCTGATCA
AGACAGTTCGCGGTTTCGGCTACAAGATGGAGGAGCCGTGA

Protein sequence :
MQTVLIIEDEKDLAELVSFNLEKEGYRTIAAPDGISGLDEAQRQVPDLILLDLMLPGMMGTEVCKILKKSEKTAKIPVIM
LTARGEEIDRVVGFEVGADDYVVKPFSTRELLLRIKAVLRRSLPDEPSGKTMRIGPIAIDPDRHTVAVAGEEIVLTTTEF
KLLLNLAERLGRVQSRDLLLKNVWGYNYVGDTRTVDTHITRLRTKLGPAGDLIKTVRGFGYKMEEP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 7e-31 42
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 8e-30 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
phoB YP_006721647.1 winged-helix phosphate transcriptional response regulator NC_002952.2859905.p0 Protein 3e-48 47
phoB YP_006721647.1 winged-helix phosphate transcriptional response regulator NC_013450.8614421.p0 Protein 4e-48 47
phoB YP_006721647.1 winged-helix phosphate transcriptional response regulator NC_007793.3914279.p0 Protein 4e-48 47
phoB YP_006721647.1 winged-helix phosphate transcriptional response regulator NC_007622.3794472.p0 Protein 3e-48 47
phoB YP_006721647.1 winged-helix phosphate transcriptional response regulator NC_002745.1124361.p0 Protein 4e-48 47
phoB YP_006721647.1 winged-helix phosphate transcriptional response regulator NC_009782.5559369.p0 Protein 4e-48 47
phoB YP_006721647.1 winged-helix phosphate transcriptional response regulator NC_002951.3237708.p0 Protein 4e-48 47
phoB YP_006721647.1 winged-helix phosphate transcriptional response regulator NC_002758.1121668.p0 Protein 4e-48 47
phoB YP_006721647.1 winged-helix phosphate transcriptional response regulator NC_003923.1003749.p0 Protein 3e-48 47
phoB YP_006721647.1 winged-helix phosphate transcriptional response regulator NC_009641.5332272.p0 Protein 4e-48 47
phoB YP_006721647.1 winged-helix phosphate transcriptional response regulator HE999704.1.gene2815. Protein 6e-47 46
phoB YP_006721647.1 winged-helix phosphate transcriptional response regulator NC_012469.1.7685629. Protein 1e-45 45
phoB YP_006721647.1 winged-helix phosphate transcriptional response regulator NC_002758.1121390.p0 Protein 4e-40 44
phoB YP_006721647.1 winged-helix phosphate transcriptional response regulator NC_010079.5776364.p0 Protein 4e-40 44
phoB YP_006721647.1 winged-helix phosphate transcriptional response regulator NC_002952.2859858.p0 Protein 4e-40 44
phoB YP_006721647.1 winged-helix phosphate transcriptional response regulator NC_007622.3794948.p0 Protein 4e-40 44
phoB YP_006721647.1 winged-helix phosphate transcriptional response regulator NC_003923.1003417.p0 Protein 4e-40 44
phoB YP_006721647.1 winged-helix phosphate transcriptional response regulator NC_013450.8614146.p0 Protein 4e-40 44
phoB YP_006721647.1 winged-helix phosphate transcriptional response regulator AE015929.1.gene1106. Protein 3e-35 44
phoB YP_006721647.1 winged-helix phosphate transcriptional response regulator NC_002951.3238224.p0 Protein 4e-40 44
phoB YP_006721647.1 winged-helix phosphate transcriptional response regulator NC_007793.3914065.p0 Protein 4e-40 44
phoB YP_006721647.1 winged-helix phosphate transcriptional response regulator BAC0125 Protein 7e-28 44
phoB YP_006721647.1 winged-helix phosphate transcriptional response regulator CP001918.1.gene5135. Protein 2e-26 44
phoB YP_006721647.1 winged-helix phosphate transcriptional response regulator HE999704.1.gene1528. Protein 3e-34 43
phoB YP_006721647.1 winged-helix phosphate transcriptional response regulator AE000516.2.gene3505. Protein 4e-40 43
phoB YP_006721647.1 winged-helix phosphate transcriptional response regulator AE016830.1.gene1681. Protein 5e-46 42
phoB YP_006721647.1 winged-helix phosphate transcriptional response regulator CP000647.1.gene4257. Protein 1e-30 41
phoB YP_006721647.1 winged-helix phosphate transcriptional response regulator CP000675.2.gene1535. Protein 1e-35 41
phoB YP_006721647.1 winged-helix phosphate transcriptional response regulator CP000034.1.gene3834. Protein 5e-31 41
phoB YP_006721647.1 winged-helix phosphate transcriptional response regulator CP001485.1.gene721.p Protein 4e-31 41
phoB YP_006721647.1 winged-helix phosphate transcriptional response regulator CP004022.1.gene3215. Protein 2e-33 41
phoB YP_006721647.1 winged-helix phosphate transcriptional response regulator BAC0533 Protein 1e-30 41
phoB YP_006721647.1 winged-helix phosphate transcriptional response regulator NC_002695.1.915041.p Protein 5e-31 41
phoB YP_006721647.1 winged-helix phosphate transcriptional response regulator FJ349556.1.orf0.gene Protein 5e-36 41
phoB YP_006721647.1 winged-helix phosphate transcriptional response regulator NC_012469.1.7686381. Protein 4e-43 41
phoB YP_006721647.1 winged-helix phosphate transcriptional response regulator BAC0197 Protein 8e-32 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
phoB YP_006721647.1 winged-helix phosphate transcriptional response regulator VFG0596 Protein 2e-31 42
phoB YP_006721647.1 winged-helix phosphate transcriptional response regulator VFG1389 Protein 1e-29 42