Gene Information

Name : pilR (Gmet_1397)
Accession : YP_006720363.1
Strain : Geobacter metallireducens GS-15
Genome accession: NC_007517
Putative virulence/resistance : Virulence
Product : sigma-54-dependent transcriptional response regulator PilR
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1565515 - 1566891 bp
Length : 1377 bp
Strand : +
Note : 'domains: REC, sigma54 interaction, HTH8'

DNA sequence : 
ATGGAAATACGAATACTGGTTGTCGATGACGAGTTGAGCATGCGGGAATTCCTCGCCATTCTCCTCAAACGCGAGGGGTA
CGCGGTGGATCAGGCCGATTGCGCGGAAAAGGCCCTGGAGTTCCTTGACTCAATTACCTACGATCTGGTCATTTCCGATG
TGAAAATGCCCGGTCTGGACGGCATTGCCCTGCTGGGGCGGATCAAGGAAAACTCTCCCGACACCGCGGTCCTCATGATG
ACCGCCTTCTCCACCGCCGAGCAGGCCGTGGAGGCCATGAAGCTGGGGGCCTACGACTACATCGCCAAGCCCTTCAAGGT
GGAGGAGGTGAAGGTCCTCGTCCGTAACGCCCTTGAGAAGCGGGACCTGAAGCGGGAAAACCAGCGTCTGCGCCAGGAGG
TCCAGGAGCGGTACGGCTTCAGCGGCTTGATCGGCAAGAGCAAGAAGATGCGGGAACTCTACTCCCTCATCGAGCGGGTG
GCCCCCAGCATCGCCAACGTCCTGATTCTGGGTGAGAGTGGCACCGGCAAGGAACTGGTGGCACGGGCCATCCACTACAA
CAGCCCCCGCAAGGACAAGGCCTTCGTGGCGGTGAACTGCGGCGCCATTCCCGAAACACTCATGGAGAGCGAACTCTTCG
GCCACAAGAAGGGCTCCTTCACCGGCGCCATCAACGACCGGGCCGGCCTCTTCGAGCAGGCCGGCGGCGGCACCCTCTTC
CTCGACGAGATCGGCGAAGTGCCGCTCCAACTTCAGGCAAAGCTCCTGCGGGTCCTCCAGGAAAAGGAGTTCAGGCGGGT
AGGGGGAGTAGCCGACCAGAAGGCCGACGTGCGGATCGTTGCCGCCTCCAACCGCAACCTGGAAGAGCAGGTGCGGGAAG
GCTCCTTCCGGGAAGACCTCTTCTACCGGCTGAACGTGGTCCAGCTCCAGATGCCTCCCCTGCGGGAGCGGACAGAAGAC
ATCCCCCTGCTGGTGGAGCATTTTTACCGCAAGTACGTTCAGTCCAACCGCAACGGAGAGATTATCACCCCTGGCGCCCT
GAAGATTCTCATGTCATATCCGTTTCCGGGAAATGTGCGCGAACTGGAGAACCTGGTGGAACGGTGCATGGTTCTTGGCG
GGGGGACCATTTCCGAGGAGAGCCTTCCGCCCCAGGTCCGGGGGAGCCAGAAGTCCGCGACGGCCCCGGTCGGTGATTTC
GAGATTCCTTCCGAAGGGATGGACCTGGAAGGGTACCTGGACGGCATCGAGAAGAGGATCCTCCTCCAGGCCCTGGAGCG
GTGCGGCGGGGTCAAGAAGAAAGCAGCCGAGCTTCTGGGGCTCACGTTCCGGTCATTCCGCTACCGTCTGGCCAAGTTCG
GGATGGATGAGGAATGA

Protein sequence : 
MEIRILVVDDELSMREFLAILLKREGYAVDQADCAEKALEFLDSITYDLVISDVKMPGLDGIALLGRIKENSPDTAVLMM
TAFSTAEQAVEAMKLGAYDYIAKPFKVEEVKVLVRNALEKRDLKRENQRLRQEVQERYGFSGLIGKSKKMRELYSLIERV
APSIANVLILGESGTGKELVARAIHYNSPRKDKAFVAVNCGAIPETLMESELFGHKKGSFTGAINDRAGLFEQAGGGTLF
LDEIGEVPLQLQAKLLRVLQEKEFRRVGGVADQKADVRIVAASNRNLEEQVREGSFREDLFYRLNVVQLQMPPLRERTED
IPLLVEHFYRKYVQSNRNGEIITPGALKILMSYPFPGNVRELENLVERCMVLGGGTISEESLPPQVRGSQKSATAPVGDF
EIPSEGMDLEGYLDGIEKRILLQALERCGGVKKKAAELLGLTFRSFRYRLAKFGMDEE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 5e-78 41
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 5e-78 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
pilR YP_006720363.1 sigma-54-dependent transcriptional response regulator PilR BAC0089 Protein 7e-100 49
pilR YP_006720363.1 sigma-54-dependent transcriptional response regulator PilR BAC0467 Protein 5e-86 46

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
pilR YP_006720363.1 sigma-54-dependent transcriptional response regulator PilR VFG1248 Protein 4e-65 46
pilR YP_006720363.1 sigma-54-dependent transcriptional response regulator PilR VFG1214 Protein 4e-87 45
pilR YP_006720363.1 sigma-54-dependent transcriptional response regulator PilR VFG0116 Protein 3e-66 45
pilR YP_006720363.1 sigma-54-dependent transcriptional response regulator PilR VFG1249 Protein 9e-74 42