Gene Information

Name : Syncc9605_1618 (Syncc9605_1618)
Accession : YP_381922.1
Strain : Synechococcus sp. CC9605
Genome accession: NC_007516
Putative virulence/resistance : Resistance
Product : two component transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 1487672 - 1488436 bp
Length : 765 bp
Strand : -
Note : -

DNA sequence : 
ATGCGCCTCCGGGCAGAATGGGCCTGTCCTTGCCATGTGGACGTGACAACCCTGTCTGCGTCTGTCTCCACCCGTCGACT
TCTCGTGGTGGAGGACGACGACAGCATTCGCGAAACAGTTGGAGAGGCCCTGCGCGCTGAAGGCTTTGAGGTGCACACCT
GTGCCGATGGCGCCTCAGCCCTCACTCTGATCACAGCCGGCAGTTCAGATCCGGTGGATTTGATCGTGCTCGATTTGATG
CTTCCGGGTTTGGGCGGGCTCGACCTTTGCCGAGAGCTCCGTCGCCTCAACAACACCACACCGATCCTGGTGATCAGCGC
CCGCGACAGTGAGACCGATCGGGTGCTGGGGCTGGAGGTGGGCGCCGACGATTACCTGGTCAAACCCTTTGGTCTTCGGG
AGCTGGTGGCCCGCTGCAGGGCTTTGCTGAGGCGGTCCAGTCAATCGGAAACGTCGCCTTCCCAACCGCATTCCTTCACT
CACGCCAACCTTTGCCTTTTCCCCAGTGAATGCAGGGTCACCCGGGATGGCACGGATCTGACCCTTTCTCCCAAGGAATA
CAAGATCCTCGAGCTGTTCATTCAGAACCCCAAACGCGTCTGGAGCCGCGATCAGTTGCTGGAGAAAATCTGGGGTGTCG
ACTTCATCGGTGACACTAAAACCGTGGATGTTCACATCCGCTGGCTGCGGGAAAAGGTGGAGCAGGAGCCCTCATCGCCT
CAGTTGATCCGTACGGTCCGCGGCTTCGGGTATCGCTTCGGCTGA

Protein sequence : 
MRLRAEWACPCHVDVTTLSASVSTRRLLVVEDDDSIRETVGEALRAEGFEVHTCADGASALTLITAGSSDPVDLIVLDLM
LPGLGGLDLCRELRRLNNTTPILVISARDSETDRVLGLEVGADDYLVKPFGLRELVARCRALLRRSSQSETSPSQPHSFT
HANLCLFPSECRVTRDGTDLTLSPKEYKILELFIQNPKRVWSRDQLLEKIWGVDFIGDTKTVDVHIRWLREKVEQEPSSP
QLIRTVRGFGYRFG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
vanRB NP_815956.1 DNA-binding response regulator VanRB Not tested Not named Protein 1e-28 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Syncc9605_1618 YP_381922.1 two component transcriptional regulator NC_012469.1.7686381. Protein 4e-41 42
Syncc9605_1618 YP_381922.1 two component transcriptional regulator AE016830.1.gene1681. Protein 2e-37 42
Syncc9605_1618 YP_381922.1 two component transcriptional regulator NC_002952.2859905.p0 Protein 6e-38 42
Syncc9605_1618 YP_381922.1 two component transcriptional regulator NC_002745.1124361.p0 Protein 5e-38 42
Syncc9605_1618 YP_381922.1 two component transcriptional regulator NC_009782.5559369.p0 Protein 5e-38 42
Syncc9605_1618 YP_381922.1 two component transcriptional regulator NC_002951.3237708.p0 Protein 5e-38 42
Syncc9605_1618 YP_381922.1 two component transcriptional regulator NC_003923.1003749.p0 Protein 5e-38 42
Syncc9605_1618 YP_381922.1 two component transcriptional regulator NC_002758.1121668.p0 Protein 5e-38 42
Syncc9605_1618 YP_381922.1 two component transcriptional regulator NC_009641.5332272.p0 Protein 5e-38 42
Syncc9605_1618 YP_381922.1 two component transcriptional regulator NC_013450.8614421.p0 Protein 5e-38 42
Syncc9605_1618 YP_381922.1 two component transcriptional regulator NC_007793.3914279.p0 Protein 5e-38 42
Syncc9605_1618 YP_381922.1 two component transcriptional regulator NC_007622.3794472.p0 Protein 6e-38 42
Syncc9605_1618 YP_381922.1 two component transcriptional regulator AE000516.2.gene3505. Protein 2e-31 42
Syncc9605_1618 YP_381922.1 two component transcriptional regulator U35369.1.gene1.p01 Protein 5e-29 41
Syncc9605_1618 YP_381922.1 two component transcriptional regulator AE016830.1.gene2255. Protein 5e-29 41
Syncc9605_1618 YP_381922.1 two component transcriptional regulator NC_012469.1.7685629. Protein 4e-36 41
Syncc9605_1618 YP_381922.1 two component transcriptional regulator HE999704.1.gene2815. Protein 3e-37 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Syncc9605_1618 YP_381922.1 two component transcriptional regulator VFG1390 Protein 8e-39 43
Syncc9605_1618 YP_381922.1 two component transcriptional regulator VFG1389 Protein 3e-31 42