Gene Information

Name : Syncc9605_1488 (Syncc9605_1488)
Accession : YP_381793.1
Strain : Synechococcus sp. CC9605
Genome accession: NC_007516
Putative virulence/resistance : Virulence
Product : ABC transporter substrate-binding protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG0803
EC number : -
Position : 1386895 - 1387908 bp
Length : 1014 bp
Strand : -
Note : -

DNA sequence : 
TTGCAGCGTTTCCCTGCAGCTGCCGCAGTTGTTTTAGGACCAACAGGTGCGATCCTTGATAGGCCAGATTTGTCTTCATT
GCACCTGTTGAGCTGGAAACGTTCGGCGGCCGTGCTGCTGGTTGTGATGGGTGTGTTGCTCGCCTCCTGCCGCAGTCGAG
ACAAGAACATCGCCGCGGATTCCCGCCCCCAGGTGCTCACCACCTTCACGGTGTTGGCTGATCTGGCCAGAAATGTGGCG
GGTGATCGGATGCAGGTGGCTTCGATCGTCAAGCCCGGGGCCGAGATCCACGGTTATCAACCCACCCCCAGTGACATCGA
GCGCGCCAGCAAGGCGGATCTGATTGTCGAGAACGGGTTGGGGCTGGAGTTGTGGGCCCAGCGTTTCACGGCTGCAGCGG
GGGACGTGCCCACCATCACACTTTCGGAGGGGATGGAGCCTCTGCTGATCAAGGAGGACGCCTATTCCGGTAAGCCCAAT
CCCCATGCCTGGATGTCCCCCCAGCGCACGATGGGCTATGTGGACCATCTGGAGCGGGCCTTCAGCCAACTCGATCCGGC
CGGAGCCGAGGTCTTTGCCGCTAACTCGTCAGTCTACAAAGCCAAGCTCAAGGCTCTGGATCAGGAGCTGCGCACGGCGA
TTGCCACGCTGCCGGCCCGGCAACGGCTGCTGGTGAGTTGTGAGGGGGCCTTCACTTATCTGGCAGCGGATTACGGACTC
GAAGAGGCCTATCTCTGGCCGGTGAATGCCGAAAGCGAGATCACACCCAAACGCATGGCACGGTTGATCGACACGGTGCG
GGAGCGGCAGGTGCCGGCCATTTTCTGTGAAAGCACCGTGAGCGATAAAGCCCAACGGGAGGTGGCAGCGGCGGCCGGAG
CACGATTCGGTGGCACCTTTTACGTGGATTCCCTCTCATCTCCGGACGGCCCTGCACCAACCCTGTTGGAACTGCAGCGG
CACAATGTGGGTCTGATCCTCAAGGGCCTGGACCTGTCCGAGAGCAACCGCTGA

Protein sequence : 
MQRFPAAAAVVLGPTGAILDRPDLSSLHLLSWKRSAAVLLVVMGVLLASCRSRDKNIAADSRPQVLTTFTVLADLARNVA
GDRMQVASIVKPGAEIHGYQPTPSDIERASKADLIVENGLGLELWAQRFTAAAGDVPTITLSEGMEPLLIKEDAYSGKPN
PHAWMSPQRTMGYVDHLERAFSQLDPAGAEVFAANSSVYKAKLKALDQELRTAIATLPARQRLLVSCEGAFTYLAADYGL
EEAYLWPVNAESEITPKRMARLIDTVRERQVPAIFCESTVSDKAQREVAAAAGARFGGTFYVDSLSSPDGPAPTLLELQR
HNVGLILKGLDLSESNR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitA YP_217781.1 iron transporter: fur regulated Virulence SPI-1 Protein 1e-64 52
sitA NP_457255.1 Iron transport protein, periplasmic-binding protein Virulence SPI-1 Protein 1e-64 52
sitA NP_806464.1 iron transporter periplasmic-binding protein Virulence SPI-1 Protein 1e-64 52
sitA NP_461782.1 periplasmic binding protein Virulence SPI-1 Protein 1e-64 52
sitA AAD41065.1 SitA Virulence centisome 63 pathogenicity island Protein 7e-65 52

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Syncc9605_1488 YP_381793.1 ABC transporter substrate-binding protein BAC0349 Protein 5e-65 52
Syncc9605_1488 YP_381793.1 ABC transporter substrate-binding protein BAC0439 Protein 3e-61 49

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Syncc9605_1488 YP_381793.1 ABC transporter substrate-binding protein VFG0525 Protein 4e-65 52