Gene Information

Name : Syncc9605_1485 (Syncc9605_1485)
Accession : YP_381790.1
Strain : Synechococcus sp. CC9605
Genome accession: NC_007516
Putative virulence/resistance : Virulence
Product : ABC transporter
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1108
EC number : -
Position : 1383918 - 1384742 bp
Length : 825 bp
Strand : -
Note : -

DNA sequence : 
ATGGAGCTTTTGCTGGAACCCCTCAGTCACGCCTTCATGGTGAAGGCTTTGATGATCAGTGCCCTGGTTGGGGGTGTTTG
CGGGCTGTTGTCCTGCTTCATGACCCTGAAGGGATGGGCGTTGATGGGTGATGCCGTCTCCCATGCTGTACTCCCTGGCG
TGGTGGTGGCCTATGCCCTGGGCCTGCCCTTCTCCCTCGGGGCGTTCGTCTTCGGTGTGGGCTCCGTTGCCGCCATCGGC
TTTGTGAAGCAGAAGTCGAGGGTGAAGGAAGACACCGTCATCGGGCTTGTCTTCACTGGCTTCTTCGCTCTGGGGCTCGT
GCTCGTCTCCAAGACGCGCAGCAACATCGATCTCACCCACATCCTGTTCGGCAATGTTCTGGGGATCTCAGCGGGGGACG
TGCAGCAGACCCTGGTGATTTCGGTGCTGGTGTTGGTGCTGCTGCTGCTGTTTCGGCGGGACCTGATGCTCTTCTGCTTC
GATCCGACCCACGCCAGATCGATCGGGATCAACACCGGACTCCTGCACTACATGCTGTTGGGACTCCTGTCCCTGGCCGC
CGTTGCCGGCCTGCAGACCGTGGGAATCATCCTGGTGGTATCCATGCTGGTCACCCCCGGTGCCACGGCCTATCTGCTCA
CCGATCGGTTTGACCGGATGACGCTGCTGGCCGTCACCAGCAGCGTGCTCTCCAGCGTTCTGGGGGTGTTCATCAGCTAC
TGGACCGACAGCTCCACCGCTGGTTGCATCGTGCTGGCACAAACCGCGCAATTCGTGCTCGCCTTTCTTCTTGCTCCTGG
CCAGGGGGTGCTGCGGCGTCTCTGA

Protein sequence : 
MELLLEPLSHAFMVKALMISALVGGVCGLLSCFMTLKGWALMGDAVSHAVLPGVVVAYALGLPFSLGAFVFGVGSVAAIG
FVKQKSRVKEDTVIGLVFTGFFALGLVLVSKTRSNIDLTHILFGNVLGISAGDVQQTLVISVLVLVLLLLFRRDLMLFCF
DPTHARSIGINTGLLHYMLLGLLSLAAVAGLQTVGIILVVSMLVTPGATAYLLTDRFDRMTLLAVTSSVLSSVLGVFISY
WTDSSTAGCIVLAQTAQFVLAFLLAPGQGVLRRL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitC NP_461784.1 permease Virulence SPI-1 Protein 1e-48 50
sitC AAD41067.1 SitC Virulence centisome 63 pathogenicity island Protein 8e-49 50
sitC NP_457257.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 1e-48 50
sitC NP_806466.1 iron transporter inner membrane protein Virulence SPI-1 Protein 1e-48 50
sitC YP_217783.1 iron transporter: fur regulated Virulence SPI-1 Protein 1e-48 50
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 3e-42 50
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 1e-42 50
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 3e-42 50
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 3e-42 50
sitD NP_461785.1 permease Virulence SPI-1 Protein 2e-42 50
EF0576 NP_814341.1 cation ABC transporter permease Not tested Not named Protein 8e-40 46
ef0094 AAM75297.1 EF0094 Not tested Not named Protein 6e-40 46

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Syncc9605_1485 YP_381790.1 ABC transporter BAC0351 Protein 5e-49 50
Syncc9605_1485 YP_381790.1 ABC transporter BAC0352 Protein 7e-43 50
Syncc9605_1485 YP_381790.1 ABC transporter BAC0442 Protein 2e-48 50
Syncc9605_1485 YP_381790.1 ABC transporter BAC0441 Protein 3e-46 48

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Syncc9605_1485 YP_381790.1 ABC transporter VFG0527 Protein 5e-49 50
Syncc9605_1485 YP_381790.1 ABC transporter VFG0528 Protein 6e-43 50