Gene Information

Name : Syncc9902_0308 (Syncc9902_0308)
Accession : YP_376324.1
Strain : Synechococcus sp. CC9902
Genome accession: NC_007513
Putative virulence/resistance : Virulence
Product : two component transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 318785 - 319531 bp
Length : 747 bp
Strand : -
Note : -

DNA sequence :
ATGACGGCCACGGCTCCCTCCAAGGAAACAATTCTCGTGGTCGATGACGAGGCCTCGATCAGACGGATTCTGGAAACCAG
GCTCTCGATGATCGGGTACAACGTCGTGACCGCTTGCGACGGCACTGAGGCTCTGGAGTTGTTCCCCAACTGCATGCCGG
ATCTCGTGGTGCTCGACGTGATGATGCCAAAGCTGGATGGCTATGGCGTCTGCCAAGAGCTCCGCAAGGAATCGGATGTT
CCGATCGTGATGCTGACAGCCCTGGGCGATGTCGCCGACCGGATCACCGGACTGGAGCTCGGCGCTGACGATTACGTGGT
GAAACCATTCAGCCCGAAGGAGCTGGAAGCACGGATCCGCTGCGTTCTTCGCAGGGTGGAGAAGGAGGCCATTGCAGGGA
TACCCAACTCTGGTGTGATCCAGGTCTCCGACCTACGCATCGACACCAACAAACGCCAAGTGTTCCGCAACGATGAGCGC
ATCCGGCTCACAGGCATGGAATTCAGCCTGCTGGAATTGCTGGTCTCGCGTTCCGGAGAACCGTTTAACCGTGGGGAAAT
TCTGAAAGAAGTGTGGGGTTACACCCCAGAACGCCACGTTGATACTCGTGTGGTTGATGTTCATATCTCCCGGCTTCGTT
CCAAACTGGAAGATGATCCTGCTAACCCTGAGTTAATCCTCACGGCTCGCGGTACCGGCTACCTGTTCCAGCGCATCATC
GACTCCGTTGCTTCCGAAGGACCCTGA

Protein sequence :
MTATAPSKETILVVDDEASIRRILETRLSMIGYNVVTACDGTEALELFPNCMPDLVVLDVMMPKLDGYGVCQELRKESDV
PIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRRVEKEAIAGIPNSGVIQVSDLRIDTNKRQVFRNDER
IRLTGMEFSLLELLVSRSGEPFNRGEILKEVWGYTPERHVDTRVVDVHISRLRSKLEDDPANPELILTARGTGYLFQRII
DSVASEGP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 1e-31 43
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 7e-31 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Syncc9902_0308 YP_376324.1 two component transcriptional regulator NC_002952.2859905.p0 Protein 8e-45 48
Syncc9902_0308 YP_376324.1 two component transcriptional regulator NC_009641.5332272.p0 Protein 1e-44 48
Syncc9902_0308 YP_376324.1 two component transcriptional regulator NC_013450.8614421.p0 Protein 1e-44 48
Syncc9902_0308 YP_376324.1 two component transcriptional regulator NC_007793.3914279.p0 Protein 1e-44 48
Syncc9902_0308 YP_376324.1 two component transcriptional regulator NC_007622.3794472.p0 Protein 8e-45 48
Syncc9902_0308 YP_376324.1 two component transcriptional regulator NC_002745.1124361.p0 Protein 1e-44 48
Syncc9902_0308 YP_376324.1 two component transcriptional regulator NC_009782.5559369.p0 Protein 1e-44 48
Syncc9902_0308 YP_376324.1 two component transcriptional regulator NC_002951.3237708.p0 Protein 1e-44 48
Syncc9902_0308 YP_376324.1 two component transcriptional regulator NC_002758.1121668.p0 Protein 1e-44 48
Syncc9902_0308 YP_376324.1 two component transcriptional regulator NC_003923.1003749.p0 Protein 1e-44 47
Syncc9902_0308 YP_376324.1 two component transcriptional regulator AE000516.2.gene3505. Protein 1e-40 47
Syncc9902_0308 YP_376324.1 two component transcriptional regulator BAC0125 Protein 4e-38 46
Syncc9902_0308 YP_376324.1 two component transcriptional regulator NC_012469.1.7685629. Protein 2e-42 46
Syncc9902_0308 YP_376324.1 two component transcriptional regulator HE999704.1.gene2815. Protein 1e-41 46
Syncc9902_0308 YP_376324.1 two component transcriptional regulator BAC0083 Protein 8e-35 43
Syncc9902_0308 YP_376324.1 two component transcriptional regulator BAC0197 Protein 8e-34 43
Syncc9902_0308 YP_376324.1 two component transcriptional regulator NC_003923.1003417.p0 Protein 3e-36 42
Syncc9902_0308 YP_376324.1 two component transcriptional regulator NC_013450.8614146.p0 Protein 3e-36 42
Syncc9902_0308 YP_376324.1 two component transcriptional regulator NC_002951.3238224.p0 Protein 3e-36 42
Syncc9902_0308 YP_376324.1 two component transcriptional regulator NC_007793.3914065.p0 Protein 3e-36 42
Syncc9902_0308 YP_376324.1 two component transcriptional regulator NC_002758.1121390.p0 Protein 3e-36 42
Syncc9902_0308 YP_376324.1 two component transcriptional regulator NC_010079.5776364.p0 Protein 3e-36 42
Syncc9902_0308 YP_376324.1 two component transcriptional regulator NC_002952.2859858.p0 Protein 3e-36 42
Syncc9902_0308 YP_376324.1 two component transcriptional regulator NC_007622.3794948.p0 Protein 3e-36 42
Syncc9902_0308 YP_376324.1 two component transcriptional regulator HE999704.1.gene1528. Protein 2e-30 42
Syncc9902_0308 YP_376324.1 two component transcriptional regulator BAC0638 Protein 2e-27 42
Syncc9902_0308 YP_376324.1 two component transcriptional regulator CP000034.1.gene3671. Protein 3e-38 42
Syncc9902_0308 YP_376324.1 two component transcriptional regulator BAC0308 Protein 1e-34 41
Syncc9902_0308 YP_376324.1 two component transcriptional regulator CP001918.1.gene5135. Protein 8e-25 41
Syncc9902_0308 YP_376324.1 two component transcriptional regulator AE016830.1.gene1681. Protein 5e-39 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Syncc9902_0308 YP_376324.1 two component transcriptional regulator VFG1390 Protein 1e-39 45
Syncc9902_0308 YP_376324.1 two component transcriptional regulator VFG0596 Protein 5e-32 43
Syncc9902_0308 YP_376324.1 two component transcriptional regulator VFG1389 Protein 4e-31 42