Gene Information

Name : Syncc9902_1389 (Syncc9902_1389)
Accession : YP_377397.1
Strain : Synechococcus sp. CC9902
Genome accession: NC_007513
Putative virulence/resistance : Virulence
Product : ATPase
Function : -
COG functional category : O : Posttranslational modification, protein turnover, chaperones
COG ID : COG0542
EC number : -
Position : 1352977 - 1355508 bp
Length : 2532 bp
Strand : -
Note : -

DNA sequence :
ATGTTCGAACGGTTTACCGAGAAGGCCATCAAAGTGATCATGCTGGCCCAAGAGGAAGCTCGAAGGCTTGGTCACAACTT
CGTCGGAACTGAGCAAATTTTGCTTGGTTTGATCGGCGAAGGCACAGGTGTCGCCGCCAAAGTTTTGAAGTCGATGGGCG
TCAACCTCAAAGACGCTCGAATTGAAGTTGAGAAAATCATTGGGCGTGGATCGGGTTTTGTAGCGGTTGAAATTCCTTTC
ACACCACGTGCCAAGCGTGTCTTGGAACTCTCTTTAGAAGAAGCTCGTCAGCTTGGTCATAACTACATCGGTACAGAGCA
TCTCCTCCTTGGCCTGATTCGCGAGGGTGAAGGTGTTGCTGCGCGTGTTCTGGAAAATCTTGGTGTCGACCTTGCGAAGG
TTCGCACTCAAGTGATCCGCATGCTGGGTGAAACCGCCGAAGTCACTGCAGGTGGCGGTGGCGGTGGTGCAAAGGGCTCC
ACCAAGACTCCGACGTTGGACGAGTTTGGTACCAACCTCACCCAAATGGCCACCGAGTCGAAGTTGGACCCTGTGGTGGG
TCGTTACAACGAAATCGACCGTGTGATTCAAATTCTTGGTCGCCGCACCAAAAATAATCCGGTCTTAATTGGTGAACCTG
GTGTTGGAAAAACTGCAATCGCGGAGGGCTTGGCCCAACGGATTCAGCAGGGTGATATCCCAGACATTCTCGAAGACAAG
CGAGTGTTGACTCTGGACATCGGCTTGTTGGTGGCAGGTACGAAGTACCGAGGTGAATTTGAGGAGCGCCTCAAAAAGAT
CATGGAGGAGATCAAATCCGCCGGAAATGTGATTTTGGTGATCGACGAAGTTCACACCTTGATTGGTGCAGGTGCCGCTG
AGGGTGCCATCGACGCCGCCAACATCCTTAAGCCGGCACTCGCTCGAGGCGAATTGCAATGCATCGGTGCCACGACCCTC
GATGAGTACAGAAAACATATCGAGCGTGATGCTGCCTTAGAGCGTCGTTTTCAGCCCGTCAATGTTGGCGAACCCTCCAT
CGACGACACCATCGAAATTCTGAGAGGCTTGCGTGAGCGCTACGAGCAACACCATCGCCTCAAGATCACTGATGAAGCGT
TAGTGGCTGCAGCAACGCTTGGTGATCGCTACATCTCCGATCGTTTCCTCCCAGATAAAGCGATTGACCTTATTGATGAA
GCGGGTTCCCGGGTTCGCTTAATGAATTCCAAACTTCCTCCTGAAGCAAAGGAAGTTGATAAGGAATTGCGCACCGTCCA
AAAGGACAAAGAAGACGCTGTTCGCGATCAGGATTTTGCCAAAGCTGGCGAATTACGCGAAAAAGAAGTTGAGCTGCGTG
AAAAAATCCGTGCGCTGATGCAAACCAGCCGTTCTTCCTCTGAGGAAGGGTCCTCCGATGAATCAGCCGTGTCGACTCCA
GCTGTTGTCGACACCACTCCAATGGTGAGTGAAGAAGATATTGCTCACATTGTGGCGTCTTGGACTGGCGTTCCTGTTCA
GAAACTCACGGAAAGTGAGTCTGTGAAGTTGCTCAATATGGAGGAAACCCTTCACCAACGCTTGATTGGACAAGATGAAG
CCGTCAAGGCTGTTTCGAAGGCCATCCGACGGGCGCGCGTTGGTTTGAAAAATCCAAATCGTCCCATTGCGAGCTTCATT
TTCTCGGGTCCAACTGGCGTTGGAAAAACAGAGCTCACCAAGGCGCTCGCGACTTACTTCTTCGGCAGTGAAGAAGCGAT
GATCCGTCTGGACATGTCGGAATTTATGGAGCGTCATACCGTCAGCAAGCTGATCGGTTCTCCTCCGGGATACGTCGGTT
TCAACGAAGGTGGGCAACTCACCGAGGCTGTTCGTCGTCGTCCTTACACAGTTGTGTTGTTCGACGAAATTGAGAAAGCC
CATCCCGATGTGTTCAATCTCTTGCTTCAGCTGCTTGAAGATGGCCGCCTGACCGATTCAAAAGGTCGCACTGTCGACTT
CAAAAATACTTTGGTCATCATGACCTCGAACATAGGTTCGAAGGTGATTGAAAAAGGTGGTGGTGGTCTTGGTTTTGAAT
TCTCTGGTGAAAGTGCTGAAGATTCTCAATACACAAGGATTCGTTCCCTTGTGAATGAAGAACTCAAGCAATATTTCCGC
CCTGAGTTCCTTAATCGCCTCGACGAGATCATTGTCTTCCGCCAACTCAATCGAGAGGAAGTCAAAGAGATCGCCGAAAT
CATGCTCAAAGAAGTGTTTGGCCGCATGGGAGAGAAAGGCATCACCCTTACGGTGTCGGATGCCTTCAAGGAGCGTTTGG
TGGAAGAGGGTTACAACCCCGCCTATGGCGCACGTCCGCTTCGCCGCGCCGTGATGCGTCTGCTCGAAGACTCCCTAGCC
GAGGAAGTTCTGACAGGTCGCATTAAAGACGGTGACCACGCAGAAGTTGACGTGGACGAGAACAAAAAGGTTGTTGTCCG
CCACAAGGGCCGTGTTGACTCTCAACCTGAGTTGGCCGGTGCTGCCGTTTGA

Protein sequence :
MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGVAAKVLKSMGVNLKDARIEVEKIIGRGSGFVAVEIPF
TPRAKRVLELSLEEARQLGHNYIGTEHLLLGLIREGEGVAARVLENLGVDLAKVRTQVIRMLGETAEVTAGGGGGGAKGS
TKTPTLDEFGTNLTQMATESKLDPVVGRYNEIDRVIQILGRRTKNNPVLIGEPGVGKTAIAEGLAQRIQQGDIPDILEDK
RVLTLDIGLLVAGTKYRGEFEERLKKIMEEIKSAGNVILVIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTL
DEYRKHIERDAALERRFQPVNVGEPSIDDTIEILRGLRERYEQHHRLKITDEALVAAATLGDRYISDRFLPDKAIDLIDE
AGSRVRLMNSKLPPEAKEVDKELRTVQKDKEDAVRDQDFAKAGELREKEVELREKIRALMQTSRSSSEEGSSDESAVSTP
AVVDTTPMVSEEDIAHIVASWTGVPVQKLTESESVKLLNMEETLHQRLIGQDEAVKAVSKAIRRARVGLKNPNRPIASFI
FSGPTGVGKTELTKALATYFFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGFNEGGQLTEAVRRRPYTVVLFDEIEKA
HPDVFNLLLQLLEDGRLTDSKGRTVDFKNTLVIMTSNIGSKVIEKGGGGLGFEFSGESAEDSQYTRIRSLVNEELKQYFR
PEFLNRLDEIIVFRQLNREEVKEIAEIMLKEVFGRMGEKGITLTVSDAFKERLVEEGYNPAYGARPLRRAVMRLLEDSLA
EEVLTGRIKDGDHAEVDVDENKKVVVRHKGRVDSQPELAGAAV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
clpC YP_005163377.1 ATP-dependent Clp protease ATP-binding subunit Not tested Not named Protein 0.0 56

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Syncc9902_1389 YP_377397.1 ATPase VFG0079 Protein 0.0 58
Syncc9902_1389 YP_377397.1 ATPase VFG0080 Protein 6e-147 52