Gene Information

Name : Syncc9902_1013 (Syncc9902_1013)
Accession : YP_377021.1
Strain : Synechococcus sp. CC9902
Genome accession: NC_007513
Putative virulence/resistance : Virulence
Product : ABC transporter
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1108
EC number : -
Position : 987969 - 988844 bp
Length : 876 bp
Strand : +
Note : -

DNA sequence : 
ATGAACCTTCTCTTGGAACCCCTGAGTCACGCCTTCATGGTGCGTGCACTGTTGGTGAGTGCTCTGGTTGGTGGGGTTTG
TGGGTTGCTGTCCTGCTACATGACGCTCAAAGGCTGGGCGCTGATGGGCGACGCGGTATCCCATGCGGTGTTACCCGGTG
TTGTGGTGGCCTATGCCCTTGGTCTGCCGTTTTCGCTTGGAGCGTTTGTGTTTGGGGTGGGTTCAGTCGCTGCCATTGGC
TTTGTGAAGCAGAAGTCGCGCGTGAAGGAAGACACCGTGATCGGTTTGGTCTTCACCGGTTTTTTTGCCCTCGGTTTGGT
GTTGGTGTCGAAAACGCGGAGCAATATTGATCTCACGCACATCCTGTTTGGAAATGTGCTCGGTATTAATGCGGCCGACA
TCATTCAAACCTTGCTGATTTCGCTCTTGGTTTTGGTGACGTTGTTGGTGTTTCGTCGGGATTTGATGCTGTTCTGCTTT
GACCCCACCCATGCACGCTCGATTGGCATCAATACAGGGGTTTTGCATTACATGCTGCTCGGACTGTTGTCCCTCGCGGC
TGTTGCAGGATTGCAAACCGTTGGAATCATTCTTGTGGTGGCCATGTTGGTCACTCCTGGTGCCACGGCTTACCTCTTGA
CCGATCGCTTTGATCGGATGACGTTGCTAGCAGTCACTAGCAGTGTCTTGTCGAGCTTGTTGGGGGTTTTCGTGAGCTAT
TGGACCGACAGCTCAACGGCTGGATGCATCGTGTTGGTGCAAACCGCCCAATTCCTCTTTGCTTTCTTGTTTGCTCCCCG
GCATGGAGTGTTGCGGCGTTATGCAGTGATGCCGTCCCTCAGTGGTGACACCAACGATGAAGAGCGGCTTCGCTGA

Protein sequence : 
MNLLLEPLSHAFMVRALLVSALVGGVCGLLSCYMTLKGWALMGDAVSHAVLPGVVVAYALGLPFSLGAFVFGVGSVAAIG
FVKQKSRVKEDTVIGLVFTGFFALGLVLVSKTRSNIDLTHILFGNVLGINAADIIQTLLISLLVLVTLLVFRRDLMLFCF
DPTHARSIGINTGVLHYMLLGLLSLAAVAGLQTVGIILVVAMLVTPGATAYLLTDRFDRMTLLAVTSSVLSSLLGVFVSY
WTDSSTAGCIVLVQTAQFLFAFLFAPRHGVLRRYAVMPSLSGDTNDEERLR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitC NP_457257.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 2e-45 52
sitC NP_806466.1 iron transporter inner membrane protein Virulence SPI-1 Protein 2e-45 52
sitC YP_217783.1 iron transporter: fur regulated Virulence SPI-1 Protein 2e-45 52
sitC NP_461784.1 permease Virulence SPI-1 Protein 2e-45 52
sitC AAD41067.1 SitC Virulence centisome 63 pathogenicity island Protein 2e-45 52
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 4e-39 51
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 5e-39 51
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 3e-39 51
sitD NP_461785.1 permease Virulence SPI-1 Protein 5e-39 51
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 4e-39 51
EF0576 NP_814341.1 cation ABC transporter permease Not tested Not named Protein 7e-35 44
ef0094 AAM75297.1 EF0094 Not tested Not named Protein 5e-35 44

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Syncc9902_1013 YP_377021.1 ABC transporter BAC0351 Protein 9e-46 52
Syncc9902_1013 YP_377021.1 ABC transporter BAC0442 Protein 8e-47 51
Syncc9902_1013 YP_377021.1 ABC transporter BAC0352 Protein 2e-39 51
Syncc9902_1013 YP_377021.1 ABC transporter BAC0441 Protein 5e-43 49

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Syncc9902_1013 YP_377021.1 ABC transporter VFG0527 Protein 9e-46 52
Syncc9902_1013 YP_377021.1 ABC transporter VFG0528 Protein 2e-39 51