Gene Information

Name : Syncc9902_1010 (Syncc9902_1010)
Accession : YP_377018.1
Strain : Synechococcus sp. CC9902
Genome accession: NC_007513
Putative virulence/resistance : Virulence
Product : ABC transporter substrate-binding protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG0803
EC number : -
Position : 984819 - 985751 bp
Length : 933 bp
Strand : +
Note : -

DNA sequence : 
ATGGCGATTCGTCTGATCTCAAGGGCTGCAGCTGTTGTGCTGGGTGTGGGTGTCATCGTTGCGGGTTGTGCTGATCGTTC
CCGTGTATCTCGGGAAGATTCACGGCCACGGGTTCTCACCACATTCACCGTGCTCGCTGATTTGGCGCGCAATGTGGCTG
GCGATCGCCTTCAGGTGCATTCGATTGTTAAGGAGGGAGCGGAAATTCATGGATATCAGCCCACGCCCAGTGATATCGAG
CGGTCTGTTGGTGCAGATCTTTTAGTTGAGAATGGGTTGGGCCTCGAACTTTGGGCACGTCGTTTTACGGCTGCAGCAGG
AGACATCCCCACCGTCACCTTGTCGGAAGGGATGGAGCCTCTTCTGATCCGCGAAGACGCTTATGCCGGAAAGCCCAACC
CCCATGCCTGGATGTCGCCGAAGCGGGCTATGGACTATGTCGATCGTCTTCGGGAGGCCTTCACCAATTTGGACCCGGAT
GGTGCGGAGGACTACGCCAATAACGCTGACGCCTACAACAAAAAACTTCAAGCCTTAGATGGTGAATTGCGTGAAGTTCT
TGCCACCATCCCACCACAACATCGAGTGTTGGTGAGCTGTGAAGGTGCTTTCACTTATCTCGCGACGGATTACGGACTCG
AGGAAGCATTCCTATGGCCTGTTAATGCCGAAAGTGAGATCACTCCGAAACGAATGGCTCGATTGATCAATACCGTGCGT
GAGCGTGCAGTCCCTGCGGTGTTCTGCGAAAGCACCGTTAGTGATAAGGCTCAACGAGAAGTCGCGGCCGCAGCTAATTC
TCGGTTTGGGGGGACGTTTTTTGTGGATTCACTTTCGAAGCCTGATGGCCCGGCGCCCACCCTCTTGGAATTGCAGCGTC
ACAATGTGAAACTGATCCTTGATGGTTTAACAGACAGGGGGGAAGACGGTTGA

Protein sequence : 
MAIRLISRAAAVVLGVGVIVAGCADRSRVSREDSRPRVLTTFTVLADLARNVAGDRLQVHSIVKEGAEIHGYQPTPSDIE
RSVGADLLVENGLGLELWARRFTAAAGDIPTVTLSEGMEPLLIREDAYAGKPNPHAWMSPKRAMDYVDRLREAFTNLDPD
GAEDYANNADAYNKKLQALDGELREVLATIPPQHRVLVSCEGAFTYLATDYGLEEAFLWPVNAESEITPKRMARLINTVR
ERAVPAVFCESTVSDKAQREVAAAANSRFGGTFFVDSLSKPDGPAPTLLELQRHNVKLILDGLTDRGEDG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitA YP_217781.1 iron transporter: fur regulated Virulence SPI-1 Protein 2e-62 50
sitA NP_457255.1 Iron transport protein, periplasmic-binding protein Virulence SPI-1 Protein 2e-62 50
sitA NP_806464.1 iron transporter periplasmic-binding protein Virulence SPI-1 Protein 2e-62 50
sitA NP_461782.1 periplasmic binding protein Virulence SPI-1 Protein 2e-62 50
sitA AAD41065.1 SitA Virulence centisome 63 pathogenicity island Protein 1e-62 50

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Syncc9902_1010 YP_377018.1 ABC transporter substrate-binding protein BAC0349 Protein 7e-63 50
Syncc9902_1010 YP_377018.1 ABC transporter substrate-binding protein BAC0439 Protein 5e-59 47

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Syncc9902_1010 YP_377018.1 ABC transporter substrate-binding protein VFG0525 Protein 6e-63 50