Gene Information

Name : XCV0618 (XCV0618)
Accession : YP_362349.1
Strain : Xanthomonas campestris 85-10
Genome accession: NC_007508
Putative virulence/resistance : Unknown
Product : transposase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 700576 - 701277 bp
Length : 702 bp
Strand : -
Note : -

DNA sequence :
ATGCACCTGCAGACGTATCAAGCCTATGGTGCCCTGCGCATGTGGCAAGCCCTGCGCCAGCACGGTGAAACCTGTGGCCG
GCATCGGGTAGAGCGACTGCGTCGAGCGCACGGCATCCGCAGCAAGCGCCGTCAGCGCTATCTGCGCACGCGTAGCACCT
ACCAACGCACCATGGTGGCGCCGAACCGCTTGGCATGGCCCTTCGTCAGCCCTGGACGCGATCGGGTCTGGGTCGCCGAT
ATCACCTTCGTGCCCACCCGCGGCGGTTGGCTGTACCTGGCAGCGATACTGGACATGCACAGCCGTCACCTTGCGGGCTG
GGCGATGGGCGCTCGTGCCGACCAAGCCCTGGCCAGTGCGGCGTTGGAGATGGCACTACAACGCCGTCGACCATCAAAGG
GCACCATCCATCACAGCGATCAGGGCTCGCAGTACACCAGCGGCGCGTATCAGCGGCAGTTGCAGGCGGCGGGCTTGGTG
GCAAGCATGAGCCGCAAAGGCATGCCGTACGACAACGCAGTGATGGAAAGCTTCTTCAGTTCGCTCAAGCAGGAGCTGAC
GCACCACGAGCAGTTTGTAAGCCTCGACGAGGCACGCGCAAAGCTATTCACATACATCGAGGTGTTCTACAACCGCCAGC
GCCTGCGCAGTGCTTTGGGCTATCGCTCGCCGGTCGAGTTTGAAAGGACGGATGTTCCTTAA

Protein sequence :
MHLQTYQAYGALRMWQALRQHGETCGRHRVERLRRAHGIRSKRRQRYLRTRSTYQRTMVAPNRLAWPFVSPGRDRVWVAD
ITFVPTRGGWLYLAAILDMHSRHLAGWAMGARADQALASAALEMALQRRRPSKGTIHHSDQGSQYTSGAYQRQLQAAGLV
ASMSRKGMPYDNAVMESFFSSLKQELTHHEQFVSLDEARAKLFTYIEVFYNRQRLRSALGYRSPVEFERTDVP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tnpA AAD44733.1 TnpA Not tested SHI-2 Protein 1e-25 48
Z1573 NP_287077.1 hypothetical protein Not tested TAI Protein 2e-34 46
Z1134 NP_286669.1 hypothetical protein Not tested TAI Protein 2e-34 46
unnamed AAB86997.1 hypothetical 31 KD protein Not tested SHI-1 Protein 2e-34 45
unnamed AAF09030.1 unknown Not tested SHI-O Protein 2e-34 45
tnpI AAD44751.1 TnpI Not tested SHI-2 Protein 2e-34 45
unnamed AAF09022.1 unknown Not tested SHI-O Protein 2e-34 45
hp1 AAC61713.1 Hp1 Not tested PAI I CFT073 Protein 1e-34 45
c3575 NP_755450.1 transposase insF Not tested PAI I CFT073 Protein 2e-34 45
insF CAC43414.1 transposase of insertion element IS3 Not tested PAI III 536 Protein 4e-26 45
unnamed AAQ07468.1 TnpI-like protein Not tested Not named Protein 2e-34 44
tnpA1133 ACK44540.1 TnpA Not tested SGI1 Protein 9e-32 43
orfB AGK07032.1 IS1133 transposase; OrfB Not tested SGI1 Protein 9e-32 43
orfB AGK07090.1 IS1133 transposase; OrfB Not tested SGI1 Protein 9e-32 43
unnamed AAL57519.1 transposase 1 Not tested LEE Protein 2e-27 42
unnamed AAL57581.1 transposase 1 Not tested LEE Protein 2e-27 42
ECO111_3732 YP_003236068.1 putative IS3 transposase InsF Not tested LEE Protein 8e-27 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
XCV0618 YP_362349.1 transposase VFG1706 Protein 9e-35 45
XCV0618 YP_362349.1 transposase VFG1631 Protein 2e-26 45