Gene Information

Name : hpaH (XCV0441)
Accession : YP_362172.1
Strain : Xanthomonas campestris 85-10
Genome accession: NC_007508
Putative virulence/resistance : Virulence
Product : transglycosylase HpaH
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG0741
EC number : -
Position : 490947 - 491420 bp
Length : 474 bp
Strand : +
Note : -

DNA sequence : 
ATGCGCGCGCAATGGTCCGGACGTGGTCGTCGGGCAGGGGCTGGTCCGCAGCGCATTTTGTTTGCGGCAGCGCTGGCATG
CGCGGCGCCTTTCGCACGCGCGGATTGCTTCGAAGAAGCTGCCGGATATCAGCACGTCAACCCTTGGGTGCTGCGGGCCA
TTGCCTGGCAGGAATCGCGCGGTCGCGCCGACGCGATCCATCGCAACAACAACGGTACGGTGGATTACGGAAAGATGCAG
ATCAACTCCATCCACCTACGGCGGCTATCCGGCTATGGAATCTCCAAGGACGCGTTGATGCAGCCCTGCGTCAGCGTGTA
TGTGGCAGCCTGGAGGTTGCGCGAGATGACCAATAAATATGGAAATACCTGGGCTGCAGTAGGCGCCTACCACTCCGAAA
CGCCGGGAGAGCGCGATAAATATGCGCATGCCATTCATTCGATTCTGCTAAGGCGCGGTGTGATTGATGAATAG

Protein sequence : 
MRAQWSGRGRRAGAGPQRILFAAALACAAPFARADCFEEAAGYQHVNPWVLRAIAWQESRGRADAIHRNNNGTVDYGKMQ
INSIHLRRLSGYGISKDALMQPCVSVYVAAWRLREMTNKYGNTWAAVGAYHSETPGERDKYAHAIHSILLRRGVIDE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hpaH AAL78295.1 HpaH precursor Virulence Hrp PAI Protein 2e-55 100
hpaH YP_362172.1 transglycosylase HpaH Virulence Hrp PAI Protein 3e-55 100
hpa2 AAF61278.1 Hpa2 precursor Virulence Hrp PAI Protein 2e-51 97
hpa2 NP_640772.1 Hpa2 protein Virulence Hrp PAI Protein 5e-52 96
XC_3001 YP_244069.1 Hpa2 protein Virulence Hrp PAI Protein 8e-51 93
hpa2 NP_636615.1 Hpa2 protein Virulence Hrp PAI Protein 8e-51 93
unnamed AAC38373.1 rOrf3 Not tested LEE Protein 2e-13 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
hpaH YP_362172.1 transglycosylase HpaH VFG0994 Protein 2e-12 43
hpaH YP_362172.1 transglycosylase HpaH VFG0719 Protein 8e-14 42