Gene Information

Name : XCV0356 (XCV0356)
Accession : YP_362087.1
Strain : Xanthomonas campestris 85-10
Genome accession: NC_007508
Putative virulence/resistance : Unknown
Product : integrase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG4974
EC number : -
Position : 406984 - 408033 bp
Length : 1050 bp
Strand : +
Note : -

DNA sequence : 
ATGACTTGCCGAATGGCAACCGACAGTCTCGGCATCGATGCTGGGGGCGTTATCCGACGTTTGAGCAGGCGTATGAGTTA
CACCCGTGAAGCTGCAGGCGCAATGACGCGCCTGACCCCCAAGCTGTTGGATCAGGTCCGTGGTCGGCTGCGGCTTCGCC
ATTACAGCCTGCGGACTGAGCAGGCGTATGTGGGCTGGATCCGGCGCTTCATTCTGGCCAATGGCAAACGGCATCCAGGA
CAGATGGGGCAAGTAGAGGTCGAGGCGTTTCTCACCGACCTGGCGACGCGGGGCCAGGTGTCGGCCGGCACGCAGAATCA
GGCGCTGGCGGCGCTGCTGTTCCTGTATCGCGAGGTTCTGGGCGTGGAGTTGCCCTGGATGGAGAATCTGGTGCGCGCCA
AGCGACCGCGGCGCATTCCCGTGGTGCTCTCGGCGGAGGAGGTCGCGCGCTTGCTGACGATGCTGGAGGGGTCTTGCCGG
CTGATGGCGGGGCTGCTGTACGGCAGCGGGATGCGGCTGCTGGAATGCCTGCGCTTGCGGATCAAGGACGTGGACGTGGT
TCGCGGCGAGATTGTGGTGCGCGATGGTAAAGGGGGCAAGGATCGGCGGGTGCCGCCGCCGCACAGCCTGCGTGGAGAAT
TGATGCAGCAGCGCGAACGGGCGTTGCTATTGCACGCCGCTGATCTCGCCGAGGGCGCAGGGCGGGTATTCCTGCCACAT
GCACTGGCGCGCAAGTATCCCAATGCCAATGTCGAGCCCGGCTGGCAGTATCTTTTCCTCGCCGCGCGTCGCTCTGTGGA
TCCGCGCAGTGGCCGCGTTGGTCGGCATCACGTATCGGAAGAAGTCCTGCAGCGTGCGGTGCAATCGGCACGGCGCCAGG
CTGGCATTGCCAAGCCTGCAACCTGCCACACGCTGCGGCATTCGTTCGCAACACACTTGCTGGAGGCCGGCCACGATATT
CGCACGGTGCAGGAGCTGCTCGGCCACAAGGACGTGACAACCAAGCAGATCTATGCGCATGTGCTGGGACGCGGTGCGTC
GGCAGTATGA

Protein sequence : 
MTCRMATDSLGIDAGGVIRRLSRRMSYTREAAGAMTRLTPKLLDQVRGRLRLRHYSLRTEQAYVGWIRRFILANGKRHPG
QMGQVEVEAFLTDLATRGQVSAGTQNQALAALLFLYREVLGVELPWMENLVRAKRPRRIPVVLSAEEVARLLTMLEGSCR
LMAGLLYGSGMRLLECLRLRIKDVDVVRGEIVVRDGKGGKDRRVPPPHSLRGELMQQRERALLLHAADLAEGAGRVFLPH
ALARKYPNANVEPGWQYLFLAARRSVDPRSGRVGRHHVSEEVLQRAVQSARRQAGIAKPATCHTLRHSFATHLLEAGHDI
RTVQELLGHKDVTTKQIYAHVLGRGASAV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
intI1 AGK07071.1 IntI1 integrase Not tested SGI1 Protein 4e-75 54
unnamed ACF06155.1 class 1 integrase Not tested Tn5036-like Protein 9e-75 54
intI1 AAK02045.1 integrase Not tested SGI1 Protein 4e-74 54
EC042_4092 YP_006098375.1 integrase Not tested Tn2411 Protein 1e-74 54
intI1 AFV53119.1 IntI1 integrase Not tested AbGRI2-1 Protein 4e-75 54
intI1 AGK07098.1 IntI1 integrase Not tested SGI1 Protein 9e-75 54
intI1 ABZ01842.1 IntI1 Not tested SGI2 Protein 4e-74 54
intI YP_001844881.1 integrase Not tested AbaR20 Protein 5e-75 54
intI1 AGK36642.1 IntI1 integrase Not tested AbaR26 Protein 4e-75 54
intI1 ABB48427.1 IntI1 integrase Not tested SGI1 Protein 4e-75 54
intI CAJ77028.1 Integrase Not tested AbaR1 Protein 4e-74 54
intI1 YP_005797130.1 integrase Not tested AbaR4e Protein 5e-75 54
intI CAJ77082.1 Integrase Not tested AbaR1 Protein 4e-75 54
intI1 ACY75520.1 integrase Not tested Tn6060 Protein 4e-74 54
intI1 YP_005797145.1 integrase Not tested AbaR4e Protein 5e-75 54
intI1 AGF35060.1 IntI1 integrase Not tested SGI1 Protein 4e-75 54
intI1 ACY75535.1 integrase Not tested Tn6060 Protein 4e-74 54
intI1 ACN81019.1 IntI1 integrase Not tested AbaR5 Protein 5e-75 54
intI1 AGK06930.1 IntI1 integrase Not tested SGI1 Protein 4e-75 54
intI1 AGF34986.1 IntI1 integrase Not tested SGI1 Protein 4e-74 54
intI1 AGK06967.1 IntI1 integrase Not tested SGI1 Protein 4e-75 54
intI1 AGF35026.1 IntI1 integrase Not tested SGI1 Protein 4e-74 54
unnamed AAL08437.1 Tn21 integrase IntI1 Not tested SRL Protein 5e-74 54
intI1 AGK07013.1 IntI1 integrase Not tested SGI1 Protein 4e-75 54
intI1 CAB46685.1 DNA integrase Not tested Not named Protein 4e-74 54
intI1 AFL65913.1 class 1 integrase Not tested SGI1-J6 Protein 4e-56 54
int1 YP_005160012.1 integrase Not tested Not named Protein 5e-60 54

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
XCV0356 YP_362087.1 integrase VFG1028 Protein 3e-74 54