|
Name : clpB1 (XCV2127) Accession : YP_363858.1 Strain : Xanthomonas campestris 85-10 Genome accession: NC_007508 Putative virulence/resistance : Virulence Product : ATP-dependent Clp protease subunit Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 2438174 - 2440912 bp Length : 2739 bp Strand : + Note : - DNA sequence : ATGGCAGACATCAGTCGCGCCGCCTTGTTCGGCAAGCTCAACAAGACCACGTATCGCGGCATCGAATCGGCCACCGCCTT CTGCAGGCTGCGTGGCGACCGCGAGGTGGATCTGCTGCATTGGCTGCATCAGTTGCTGCAGGCGCAAGACGGCGACCTGC ATCGCATCGTGCGTCATTTTTCGCTCGATGCGGCGCGACTTGCGCTGGACCTGACCGCAGCGCTCGATCGGCTGCCGCGT GGCGGTGGCGGGCATTTCGATCTGTCGGCCAGCGTGGAGGAGGCAGTGGAACGCGCCTGGGTGCACTGCACGCTGCGCTA CGGCCGGCAGCGCATCCGGGGCGGCGACCTGCTGGTGGCGATCCTGCATACGCGCAGCCTGCGCAACGGCTTGCTGGCAA TGTCCAGCGAGTTCGGCAAGCTGCGCGCAGAGGCGCTGGCCGACGATCTGGACGCCATCGTCGCCGGCTCGCCGGAGGAC GATGCCACCGATATTGCGGCGGCCAGCGCTCCCGCCGGACCAGCCGCCGCTGGTGGGACTGCCGCGCTCGCGCTGTATAC GGTCGACCTCACCGCACAAGCACGCGAGGGCAAGCTAGACCCGATCATCGGCCGCGACGACGAGATCCGCCAGGTCGTCG ATATCCTGATGCGCCGCCGCCAGAACAACCCGATCCTGGTCGGCGAGGCCGGTGTCGGCAAGACCGCGGTGGTGGAAGGC TTCGCACAACGCATCGCGCGCGGCGATGTGCCGCCCGCGTTGAAGGATGTGCAGCTGCGCACGCTGGATGTGGGCCTGCT GCAGGCCGGCGCCAGCATGAAGGGCGAATTCGAGCAACGCCTGCGCGCAGTCATCGACGAAGTGCAGGCCAGCCCCAAGC CGATCATTTTGTTTGTCGACGAAACCCACACCCTGGTCGGCGCCGGTGGCGCGGCCGGTACCGGCGATGCGGCCAACCTG CTCAAGCCCGCACTGGCGCGTGGCACCTTGCGCACCGTGGGGGCGACCACGTTTGCCGAGTACAAGAAGTACATCGAAAA GGATCCGGCATTGACGCGACGTTTCCAGGCCGTGCAGGTGGACGAGCCGGACGAAGCCAAGGCGGTGCGCATGATGCGCG GCGTCGCTTCGATGATGGAACAGCACCACCGTGTGCAGATCCTGGACGAAGCGCTGGAAGCGGCAGTCAAGCTCAGTCAC CGCTACATCCCGGCGCGGCAGCTGCCGGACAAATCGGTGAGCCTACTCGACACCGCCTGCGCGCGCGTGGCGGTGAGCCT GCACGCTACGCCTGCGGAAGTGGACGACAGTCGCCGCCGCATCGAATCGCTGGAGACCGAACACGCCATCATCGAACGCG AGCGTGCGATTGGTATCGTGGTGGAGGAGCGTGCTGCCGCTTGCGCCAACCTGCTGCAAAGCGAGCATAGCCGCCTGCGC GAGCTGGACCAGCGCTGGGTTGGCGAGAAGGCATTGGTGGACGAGCTGTTGTCGTTGCGCGCACAACTGCGTAGCAGTAA TTCATCGGTGGAAGGCACCGGCAGTGCGTTGGAAGCAGAGGCCGACACCGACGCAGATGCCGCCGCAGATGCCGCTGTCG CGCAGTCGGCGTCTGGCGACACTGCCGTGCTCGACGCACCGGTACAAGTTGATCGCGACACCTTACTGGCACGTCTGCAG CTGGTGCAGGCTGAACTGGCAGCATTACAAGGCGAATCGCCGCTGATCCTACCCACGGTCGATTACCAGGCGGTCGCCGC CGTGGTCGCCGACTGGACCGGCATCCCGGTCGGGCGCATGGCGCGCAACGAGATCGACACCGTGCTGCGCCTGCCCGACC TGCTGGCCAAGCGCGTGATCGGCCAGGACCACGCCATGGAAATGATCGCCAAGCGCATCCAGACCAGCCGCGCCGGTCTG GACAACCCGGACAAACCGATCGGCGTGTTTCTGCTGGCCGGCACCTCCGGCGTCGGCAAGACCGAAACCGCACTCGCGCT GGCCGAAACCTTGTACGGCGGCGAACAAAATCTGATCACCATCAACATGAGCGAGTACCAGGAAGCGCATACCGTCTCCT CGCTCAAGGGTGCACCGCCGGGCTATGTGGGCTACGGCGAAGGCGGCGTGCTCACCGAAGCGGTGCGCCGCAAGCCGTAC TCGGTGGTGCTGCTGGACGAAGTGGAGAAAGCCCACCCGGACGTGCACGAACTGTTCTTCCAGGTCTTCGACAAGGGCTG GATGGAAGACGGCGAAGGCCGCCGCATCGACTTCCGCAATACCTTGATCATCCTCACCAGCAACGCCGGCACCGACCTGA TCGCCAGCCTGTGCAAGGACCCGGAGCTGATACCCGACCCGGAAGCCATGGCCAAGGCCATCCGCGAGCCGTTGTTGAAG GTGTTTCCGCCGGCATTGCTCGGGCGGCTGGTGGCGATTCCGTATTACCCGCTGAGCAACGACATGCTCGGCCAGATCGT GCGGTTGCAGTTGAATCGCATCAAGAAGCGCATCGAGGAGCGCTACAAGATTCCGTTCGAGTACGACCACTCGGTGGTGG AGCTGGTGGTATCGCGGTGCACTGAAAGCGAGTCGGGCGGACGAATGATTGATGCGATTTTGACTAACTCGATGTTGCCG GAGATCAGTCGGCAGTTTCTCACTCGGGTGATTGAGGGCAAGAAAATCAATCATTCGCGCGCATCGGCCGTGGCGGATGG CTTTTTCTACGAATTCTGA Protein sequence : MADISRAALFGKLNKTTYRGIESATAFCRLRGDREVDLLHWLHQLLQAQDGDLHRIVRHFSLDAARLALDLTAALDRLPR GGGGHFDLSASVEEAVERAWVHCTLRYGRQRIRGGDLLVAILHTRSLRNGLLAMSSEFGKLRAEALADDLDAIVAGSPED DATDIAAASAPAGPAAAGGTAALALYTVDLTAQAREGKLDPIIGRDDEIRQVVDILMRRRQNNPILVGEAGVGKTAVVEG FAQRIARGDVPPALKDVQLRTLDVGLLQAGASMKGEFEQRLRAVIDEVQASPKPIILFVDETHTLVGAGGAAGTGDAANL LKPALARGTLRTVGATTFAEYKKYIEKDPALTRRFQAVQVDEPDEAKAVRMMRGVASMMEQHHRVQILDEALEAAVKLSH RYIPARQLPDKSVSLLDTACARVAVSLHATPAEVDDSRRRIESLETEHAIIERERAIGIVVEERAAACANLLQSEHSRLR ELDQRWVGEKALVDELLSLRAQLRSSNSSVEGTGSALEAEADTDADAAADAAVAQSASGDTAVLDAPVQVDRDTLLARLQ LVQAELAALQGESPLILPTVDYQAVAAVVADWTGIPVGRMARNEIDTVLRLPDLLAKRVIGQDHAMEMIAKRIQTSRAGL DNPDKPIGVFLLAGTSGVGKTETALALAETLYGGEQNLITINMSEYQEAHTVSSLKGAPPGYVGYGEGGVLTEAVRRKPY SVVLLDEVEKAHPDVHELFFQVFDKGWMEDGEGRRIDFRNTLIILTSNAGTDLIASLCKDPELIPDPEAMAKAIREPLLK VFPPALLGRLVAIPYYPLSNDMLGQIVRLQLNRIKKRIEERYKIPFEYDHSVVELVVSRCTESESGGRMIDAILTNSMLP EISRQFLTRVIEGKKINHSRASAVADGFFYEF |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| aec27 | YP_851418.1 | ATPase | Not tested | PAI II APEC-O1 | Protein | 7e-125 | 47 |
| aec27 | AAQ96721.1 | Aec27 | Not tested | AGI-1 | Protein | 5e-125 | 47 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpB1 | YP_363858.1 | ATP-dependent Clp protease subunit | VFG2076 | Protein | 0.0 | 70 |
