Gene Information

Name : CHY_0089 (CHY_0089)
Accession : YP_358961.1
Strain : Carboxydothermus hydrogenoformans Z-2901
Genome accession: NC_007503
Putative virulence/resistance : Resistance
Product : ABC transporter ATP-binding protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 76039 - 76731 bp
Length : 693 bp
Strand : +
Note : identified by match to protein family HMM PF00005

DNA sequence :
GTGATTGAACTAATAGATGTGGTTAAAGAGTACGAGGTAGGGAAAGAGCGCTTTCGGGCTTTAAAAAATATTAGTTTAAA
GATAAAAGCCGGAGAGTTTACTTCGATTATGGGCCCATCGGGGTCCGGTAAATCAACATTGATGAATATTTTAGGGCTTC
TTGATAGGGCGACAATTGGTAGCTACTATTTAGACGGTCGTGATGTGTCTAAGCTTTCCGATAAAGAGCGGGCTTTTATC
AGAAACCGGGAGATTGGCTTTGTTTTTCAGGCGTTTAATTTAATTCCCCGCATGACGGTTTTAGACAATGTTATGCTGCC
GATGGTTTATGCCCGCATCCCCGGAAAAATGCGGCGGGAAAAAGCCTTGGAGGCTTTAGCCAAAGTAGGTCTTCTACATC
GTATTAAACACTATCCCAATGAAATTTCCGGTGGGGAAAAGCAGCGGGTCGCAATTGCCCGGGCTATAGTTAATACCCCT
AAAGTAATTTTAGCGGACGAGCCGACCGGGAACTTAGACTCCAAGTCTTCAGAGGAAATTATGAAAATTTTTCAGAAGTT
AAATGATGAAGGGGTAACGATAGTGGTAGTTACCCATGAGCCGGATATCGCCCAGCATACTAAGAGGATAATACGTTTTC
GTGATGGCCAAATAATATCCGACGAACCGGTGGTAAACCGGATTGTATTATAG

Protein sequence :
MIELIDVVKEYEVGKERFRALKNISLKIKAGEFTSIMGPSGSGKSTLMNILGLLDRATIGSYYLDGRDVSKLSDKERAFI
RNREIGFVFQAFNLIPRMTVLDNVMLPMVYARIPGKMRREKALEALAKVGLLHRIKHYPNEISGGEKQRVAIARAIVNTP
KVILADEPTGNLDSKSSEEIMKIFQKLNDEGVTIVVVTHEPDIAQHTKRIIRFRDGQIISDEPVVNRIVL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cur_1502 YP_001800896.1 cell division ATP-binding protein FtsE Not tested Not named Protein 4e-32 41
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-33 41
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-34 41
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 2e-34 41
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-34 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CHY_0089 YP_358961.1 ABC transporter ATP-binding protein NC_012469.1.7686878. Protein 4e-57 52
CHY_0089 YP_358961.1 ABC transporter ATP-binding protein NC_008702.1.4606598. Protein 1e-44 47
CHY_0089 YP_358961.1 ABC transporter ATP-binding protein CP001581.1.gene798.p Protein 1e-35 44
CHY_0089 YP_358961.1 ABC transporter ATP-binding protein NC_012469.1.7686946. Protein 2e-29 42
CHY_0089 YP_358961.1 ABC transporter ATP-binding protein CP001581.1.gene598.p Protein 1e-34 42