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Name : dnaB (CHY_0041) Accession : YP_358913.1 Strain : Carboxydothermus hydrogenoformans Z-2901 Genome accession: NC_007503 Putative virulence/resistance : Unknown Product : replicative DNA helicase Function : - COG functional category : L : Replication, recombination and repair COG ID : COG0305 EC number : 3.6.1.- Position : 32795 - 34126 bp Length : 1332 bp Strand : + Note : identified by match to protein family HMM PF00772; match to protein family HMM PF03796; match to protein family HMM TIGR00665 DNA sequence : ATGAACGAGCTTTTAATGCTACCTCCGCATAATATTGATGCCGAACAGGCGGTTCTTGGGACCATATTAAGTAATGGTGA AAGCCTTTATAAAGTCATTGAAATCTTAAAACCCGAGGATTTTTACCGGGAATCCCATAAACTTCTTTACCAGGTAATGC TTGAATTAAATGAAAAGGGCGAACCGATTACCATTTTAACGGTAACCGAGGCCTTAAAACAAAAAGGTGACCTGGAGCGG GCGGGGGGAGTTTCGTATATTGCTTCCCTTTTAGCCATGGCAGTGCCGGAAGCTACCCTGGAAAGCCATGCCGAGATAAT TGAAGAAAAAGCAGTTTTGCGGCATTTAATAGACCTTTCGGAGAAAATAAAAAGGCTTAGTTATACTGAAAAAGATGCGG AAAGCATTTTAGAAGAGGCGGAACGACTGGTTTTAGAAGTAGGAATGAAACGGAATCAGCAGTCGTATACCGCGGTTCGA GAAATTGTTTACGACGCCATCGAACGAATTGAGTTTTTATACCAGAACCGGGGCAATATTACCGGGATTCCGACTCATTT TTACGATTTAGACCGGATGTTAAACGGCTTGCAAAAAAGCGACCTGATTATTGTGGCCGCCCGGCCGGCGATGGGAAAAA CCAGTTTTTGTCTTAATGTCGCCCAAAATGCTGCGATTAAAAGCGGAGTGCCGGTGGCGGTTTTTAGCCTGGAAATGTCC AAAGAGCAGCTGGTGACCAGGATGCTGACCTCCGAAGCCATGGTAGACCAGCACCGGGTAAGGGCCGGGGAGCTTTCCGA TGAAGATTGGTTGCGGTTAACCGAAGTGGCGGGAATATTAGCTAAAGCTCCGATTTACATTGACGATACTCCCGGTTTAA CGATACGCGAGCTCCGGGCCAGAGCAAGGAGGCTTAAGCAGGAAAAAAACATCGGGTTAATTATAATTGACTACCTGCAA CTTTTAAACGGCAGTCGCCGGGCCGAAAGCCGGCAGCAGGAAATTTCCGAAATCTCCCGGGCCTTAAAAGGGCTGGCGAA AGAGTTAGACTTGCCGGTGGTGGCGTTATCCCAGCTTTCCCGGGCGGTGGAGGCGCGGCAGGATAAAAGGCCTATTATGT CGGATTTAAGGGAATCCGGTTCGTTAGAGCAGGATGCCGATATTGTCATGTTTATCTACCGGGAAGAGTATTACAAGCCC GATACGGAAAAGAAAAGCATAGCGGAAATTATCATTGCCAAGCAAAGAAACGGCCCAACGGGGATTGTGGAGCTGGGATT TTTAAAAGAATTCACCAAATTTGTTAATTTAGCCAAAAAGTATACGGAATAA Protein sequence : MNELLMLPPHNIDAEQAVLGTILSNGESLYKVIEILKPEDFYRESHKLLYQVMLELNEKGEPITILTVTEALKQKGDLER AGGVSYIASLLAMAVPEATLESHAEIIEEKAVLRHLIDLSEKIKRLSYTEKDAESILEEAERLVLEVGMKRNQQSYTAVR EIVYDAIERIEFLYQNRGNITGIPTHFYDLDRMLNGLQKSDLIIVAARPAMGKTSFCLNVAQNAAIKSGVPVAVFSLEMS KEQLVTRMLTSEAMVDQHRVRAGELSDEDWLRLTEVAGILAKAPIYIDDTPGLTIRELRARARRLKQEKNIGLIIIDYLQ LLNGSRRAESRQQEISEISRALKGLAKELDLPVVALSQLSRAVEARQDKRPIMSDLRESGSLEQDADIVMFIYREEYYKP DTEKKSIAEIIIAKQRNGPTGIVELGFLKEFTKFVNLAKKYTE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | ABR13456.1 | replicative DNA helicase | Not tested | PAGI-5 | Protein | 3e-73 | 42 |
| PMI2640 | YP_002152342.1 | DNA helicase | Not tested | Not named | Protein | 1e-59 | 41 |
| dnaB2 | YP_001402701.1 | replicative DNA helicase | Not tested | YAPI | Protein | 5e-69 | 41 |
| api2 | CAF28476.1 | putative DNA binding protein with DNA-dependent ATPase activity | Not tested | YAPI | Protein | 2e-69 | 41 |
