Gene Information

Name : CHY_2047 (CHY_2047)
Accession : YP_360866.1
Strain : Carboxydothermus hydrogenoformans Z-2901
Genome accession: NC_007503
Putative virulence/resistance : Virulence
Product : DNA-binding response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 1833209 - 1833904 bp
Length : 696 bp
Strand : -
Note : identified by match to protein family HMM PF00072; match to protein family HMM PF00486

DNA sequence : 
ATGAAAATTTTAGTGGTGGATGATGAAGCTCCAATTGTGGAGCTAATAAAGTTCAACCTGGAGCGGGAAGGTTATAAAGT
TTTGGAAGCTTATGATGGTATAAGAGCCCTTGAGATTGTAAAAAAAGAGCTTCCGGATTTAGTTATCCTTGATATTATGC
TTCCCGGAATGAGTGGTTTGGAAGTATGTAAAAATATCAGGAACAATGAAAAAACAGCGGAAATACCAATCATCATGTTA
AGCGCCCGCGGGGAGGAAGTGGATAAAATCCTGGGCTTAGAGTTAGGGGCCGATGATTATATGGTGAAGCCCTTTTCTCC
CCGGGAACTGGTAGCCAGGGTTAAAGCAAGACTCAGACGTTTGGAAGGAAGAGAGGGGAAGAAAGAGGGAATTATCAAAA
TTAAAGATATTGTCATAGATCAGGAAAAATTTGCGGTTTACGTTAAGGGCAAAAAAATGGATTTTACTCCCAAAGAGTTT
GAGCTTTTAAAGCTTTTAGCCAGTAATCCCGGTAAAGTATTTACCCGGGAATATCTTTTAGAGAAAATATGGGGTTACGA
GTTTTTGGGAGATACCCGGACGGTGGATGTTCATATTCGTCATATACGACAAAAGATAGAAGATAATCCGGCAGATCCGG
TTTACATCGAAACCGTTCGGGGAGTGGGTTACCGGTTCGGTGAGGAAAAGAAATGA

Protein sequence : 
MKILVVDDEAPIVELIKFNLEREGYKVLEAYDGIRALEIVKKELPDLVILDIMLPGMSGLEVCKNIRNNEKTAEIPIIML
SARGEEVDKILGLELGADDYMVKPFSPRELVARVKARLRRLEGREGKKEGIIKIKDIVIDQEKFAVYVKGKKMDFTPKEF
ELLKLLASNPGKVFTREYLLEKIWGYEFLGDTRTVDVHIRHIRQKIEDNPADPVYIETVRGVGYRFGEEKK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
c3565 NP_755440.1 response regulator Not tested PAI I CFT073 Protein 2e-36 44
unnamed CAD42044.1 hypothetical protein Not tested PAI II 536 Protein 7e-37 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CHY_2047 YP_360866.1 DNA-binding response regulator NC_002952.2859905.p0 Protein 4e-48 54
CHY_2047 YP_360866.1 DNA-binding response regulator NC_007793.3914279.p0 Protein 4e-48 54
CHY_2047 YP_360866.1 DNA-binding response regulator NC_002758.1121668.p0 Protein 4e-48 54
CHY_2047 YP_360866.1 DNA-binding response regulator NC_007622.3794472.p0 Protein 3e-48 54
CHY_2047 YP_360866.1 DNA-binding response regulator NC_009641.5332272.p0 Protein 4e-48 54
CHY_2047 YP_360866.1 DNA-binding response regulator NC_013450.8614421.p0 Protein 4e-48 54
CHY_2047 YP_360866.1 DNA-binding response regulator NC_002951.3237708.p0 Protein 4e-48 54
CHY_2047 YP_360866.1 DNA-binding response regulator NC_003923.1003749.p0 Protein 4e-48 54
CHY_2047 YP_360866.1 DNA-binding response regulator NC_002745.1124361.p0 Protein 4e-48 54
CHY_2047 YP_360866.1 DNA-binding response regulator NC_009782.5559369.p0 Protein 4e-48 54
CHY_2047 YP_360866.1 DNA-binding response regulator NC_012469.1.7685629. Protein 5e-44 52
CHY_2047 YP_360866.1 DNA-binding response regulator HE999704.1.gene2815. Protein 6e-47 51
CHY_2047 YP_360866.1 DNA-binding response regulator AE016830.1.gene1681. Protein 1e-46 48
CHY_2047 YP_360866.1 DNA-binding response regulator NC_012469.1.7686381. Protein 2e-40 48
CHY_2047 YP_360866.1 DNA-binding response regulator AE000516.2.gene3505. Protein 4e-40 47
CHY_2047 YP_360866.1 DNA-binding response regulator NC_005054.2598277.p0 Protein 6e-38 46
CHY_2047 YP_360866.1 DNA-binding response regulator NC_014475.1.orf0.gen Protein 6e-38 46
CHY_2047 YP_360866.1 DNA-binding response regulator AF155139.2.orf0.gene Protein 4e-36 44
CHY_2047 YP_360866.1 DNA-binding response regulator BAC0039 Protein 1e-33 43
CHY_2047 YP_360866.1 DNA-binding response regulator CP001138.1.gene2239. Protein 2e-32 43
CHY_2047 YP_360866.1 DNA-binding response regulator CP000034.1.gene2186. Protein 1e-33 43
CHY_2047 YP_360866.1 DNA-binding response regulator NC_002695.1.916589.p Protein 1e-33 43
CHY_2047 YP_360866.1 DNA-binding response regulator BAC0596 Protein 2e-32 43
CHY_2047 YP_360866.1 DNA-binding response regulator DQ212986.1.gene4.p01 Protein 4e-33 42
CHY_2047 YP_360866.1 DNA-binding response regulator HE999704.1.gene1528. Protein 6e-31 42
CHY_2047 YP_360866.1 DNA-binding response regulator AM180355.1.gene1830. Protein 1e-30 42
CHY_2047 YP_360866.1 DNA-binding response regulator CP001581.1.gene280.p Protein 4e-26 42
CHY_2047 YP_360866.1 DNA-binding response regulator CP001918.1.gene3444. Protein 2e-32 42
CHY_2047 YP_360866.1 DNA-binding response regulator CP000675.2.gene1535. Protein 1e-28 41
CHY_2047 YP_360866.1 DNA-binding response regulator FJ349556.1.orf0.gene Protein 2e-34 41
CHY_2047 YP_360866.1 DNA-binding response regulator AF162694.1.orf4.gene Protein 2e-27 41
CHY_2047 YP_360866.1 DNA-binding response regulator CP000647.1.gene2531. Protein 5e-33 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CHY_2047 YP_360866.1 DNA-binding response regulator VFG1702 Protein 6e-37 44
CHY_2047 YP_360866.1 DNA-binding response regulator VFG1563 Protein 4e-37 43
CHY_2047 YP_360866.1 DNA-binding response regulator VFG1389 Protein 8e-24 41