Gene Information

Name : xerD (CHY_1964)
Accession : YP_360783.1
Strain : Carboxydothermus hydrogenoformans Z-2901
Genome accession: NC_007503
Putative virulence/resistance : Unknown
Product : tyrosine recombinase XerD
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG4974
EC number : -
Position : 1755835 - 1756698 bp
Length : 864 bp
Strand : -
Note : identified by match to protein family HMM PF00589; match to protein family HMM PF02899; match to protein family HMM TIGR02225

DNA sequence : 
ATGCTTGACCTTTTTATCGATTATTTATTGTTAGAAAAGGGCTTTTCTCTAAACACTCTCCTGTCTTACCGCCGGGATTT
AGAGAAGTTTGTTTCTTTTTTGGAAAAACGAAATATCAGTATCATTGACGCAACTTCTAAGGATATTAAACTTTATTTGC
AGGATTTAGCCCGGAAGCTAAAACCGGCAAGTGTAGCGAGAAATCTTGCTGCAATCCGAAGTTTTTATAAATATTTACTT
CGGGAAAAGATTGTCGGGGAAAATCCTGCTTTGGATGTGGACGGGCCTAAACTTGGGTTAAAATTACCGGAAATCTTAAG
TTACGAAGAAATTGATTTGCTTCTAAAAGCCCCCGACCTTTCTACCTGGGAAGGGGTGAGAGACCGGGCAATGTTAGAAC
TGCTTTATGCCACCGGGCTTAGGGTGTCGGAGTTAGTGAATCTTGAACTACCTAACTTATATTTGGACGAGAGATATGTT
AAAATCTTGGGTAAAGGAGCAAAGATGCGGATTGTTCCCTTTGGAGAAGTAGCAGCCCACTACTTAAACCAGTATTTAGC
CCTGAGAGCTAAGCGGAAAAGCAACTCTTTAAAGCTTTTTATTACCCGGAAGGGCAGTGGTTTTACCCGTCAGGGATTCT
GGAAAATGCTAAAAAGATACGGGCAAAAAGCTGGAATAGTAAAAAACTTGACCCCCCATTTAATCCGCCATTCTTTTGCC
ACTCATCTCCTGGAAAACGGTGCGGATTTAAGAATTGTTCAGGAACTCCTTGGTCACAGTTTTATAGAAACGACGCAAAT
TTATACCCACTTAACTACGAGAAAACTGCGAGAGGTATTTCGTAAAGCACATCCACGAGCTTAG

Protein sequence : 
MLDLFIDYLLLEKGFSLNTLLSYRRDLEKFVSFLEKRNISIIDATSKDIKLYLQDLARKLKPASVARNLAAIRSFYKYLL
REKIVGENPALDVDGPKLGLKLPEILSYEEIDLLLKAPDLSTWEGVRDRAMLELLYATGLRVSELVNLELPNLYLDERYV
KILGKGAKMRIVPFGEVAAHYLNQYLALRAKRKSNSLKLFITRKGSGFTRQGFWKMLKRYGQKAGIVKNLTPHLIRHSFA
THLLENGADLRIVQELLGHSFIETTQIYTHLTTRKLREVFRKAHPRA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00307 YP_008207772.1 Site-specific recombinase XerD Not tested AbaR25 Protein 2e-47 45
BJAB0868_00311 YP_008211637.1 Site-specific recombinase XerD Not tested AbaR26 Protein 2e-47 45