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Name : CHY_1413 (CHY_1413) Accession : YP_360245.1 Strain : Carboxydothermus hydrogenoformans Z-2901 Genome accession: NC_007503 Putative virulence/resistance : Resistance Product : DNA-binding response regulator Function : - COG functional category : T : Signal transduction mechanisms COG ID : COG0745 EC number : - Position : 1265186 - 1265872 bp Length : 687 bp Strand : - Note : identified by match to protein family HMM PF00072; match to protein family HMM PF00486 DNA sequence : ATGAAAACAATACTTCTGGTGGATGATGAAGAAAAAATCCGGGAAGTATTGCGGCTTTATCTTGAAAAGGAAGGTTTTCT GGTTTTGGAAGCCCAGGATGGAAAAGAGGCATTAAAGCGTTTTTCCGAGCATAAAATAGATTTAATTATTCTTGATTTGA TGCTTCCGGAGATTGATGGGATGGAGATTGCCAAAGAAATACGTAAAACCTCGTTGGTTCCTATAATCATGCTGACCGCG CGGGGAGAAGAGATTGACAAAATTTTAGGCTTAGAAATTGGTGCTGACGATTATGTGGTAAAACCTTTTAGTCCGAGGGA AGTGGTTGCCCGGGTAAAAGCGGTTTTACGGAGGAGTTCTGGTATCCCAGAAAAAGAGGCGAGTTCGGTTATAAAGCAGG GTATTTTAGAAATTCATCCGGAGGCCAGAGAAGTAAAGGTTAATGGAGAAGAAGTAGTGCTAACACCCTTAGAGTTTGAT CTTCTTTTATATTTGGTTACTAATCGAGGGAAAGCTCTTTCGCGGGAACAGTTGCTTGCCAATGTTTGGGGATATGATTA TTTTGGCGAAGCCCGAACGGTTGATACTCACGTTACCCGTTTGCGGGAAAAGTTGCAAGAGGCAGCTTCCTATATCAAAA CTGTTTGGGGGGTAGGTTACAAGTTTGAGGTGAAAAACGGTGATTAA Protein sequence : MKTILLVDDEEKIREVLRLYLEKEGFLVLEAQDGKEALKRFSEHKIDLIILDLMLPEIDGMEIAKEIRKTSLVPIIMLTA RGEEIDKILGLEIGADDYVVKPFSPREVVARVKAVLRRSSGIPEKEASSVIKQGILEIHPEAREVKVNGEEVVLTPLEFD LLLYLVTNRGKALSREQLLANVWGYDYFGEARTVDTHVTRLREKLQEAASYIKTVWGVGYKFEVKNGD |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD42044.1 | hypothetical protein | Not tested | PAI II 536 | Protein | 1e-42 | 45 |
| c3565 | NP_755440.1 | response regulator | Not tested | PAI I CFT073 | Protein | 5e-42 | 44 |
| vanRB | YP_008394254.1 | DNA-binding response regulator VanRB | Not tested | Not named | Protein | 3e-40 | 42 |
| vanRB | NP_815956.1 | DNA-binding response regulator VanRB | Not tested | Not named | Protein | 6e-39 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| CHY_1413 | YP_360245.1 | DNA-binding response regulator | NC_012469.1.7685629. | Protein | 1e-53 | 54 |
| CHY_1413 | YP_360245.1 | DNA-binding response regulator | HE999704.1.gene2815. | Protein | 2e-51 | 52 |
| CHY_1413 | YP_360245.1 | DNA-binding response regulator | DQ212986.1.gene4.p01 | Protein | 3e-46 | 49 |
| CHY_1413 | YP_360245.1 | DNA-binding response regulator | NC_002952.2859905.p0 | Protein | 4e-49 | 49 |
| CHY_1413 | YP_360245.1 | DNA-binding response regulator | NC_013450.8614421.p0 | Protein | 5e-49 | 49 |
| CHY_1413 | YP_360245.1 | DNA-binding response regulator | NC_007793.3914279.p0 | Protein | 5e-49 | 49 |
| CHY_1413 | YP_360245.1 | DNA-binding response regulator | NC_002745.1124361.p0 | Protein | 5e-49 | 49 |
| CHY_1413 | YP_360245.1 | DNA-binding response regulator | NC_009782.5559369.p0 | Protein | 5e-49 | 49 |
| CHY_1413 | YP_360245.1 | DNA-binding response regulator | NC_002951.3237708.p0 | Protein | 5e-49 | 49 |
| CHY_1413 | YP_360245.1 | DNA-binding response regulator | NC_003923.1003749.p0 | Protein | 5e-49 | 49 |
| CHY_1413 | YP_360245.1 | DNA-binding response regulator | NC_002758.1121668.p0 | Protein | 5e-49 | 49 |
| CHY_1413 | YP_360245.1 | DNA-binding response regulator | NC_007622.3794472.p0 | Protein | 4e-49 | 49 |
| CHY_1413 | YP_360245.1 | DNA-binding response regulator | NC_009641.5332272.p0 | Protein | 5e-49 | 49 |
| CHY_1413 | YP_360245.1 | DNA-binding response regulator | AM180355.1.gene1830. | Protein | 4e-46 | 48 |
| CHY_1413 | YP_360245.1 | DNA-binding response regulator | NC_012469.1.7686381. | Protein | 3e-47 | 47 |
| CHY_1413 | YP_360245.1 | DNA-binding response regulator | FJ349556.1.orf0.gene | Protein | 2e-43 | 46 |
| CHY_1413 | YP_360245.1 | DNA-binding response regulator | AF162694.1.orf4.gene | Protein | 3e-43 | 46 |
| CHY_1413 | YP_360245.1 | DNA-binding response regulator | EU250284.1.orf4.gene | Protein | 4e-43 | 46 |
| CHY_1413 | YP_360245.1 | DNA-binding response regulator | NC_014475.1.orf0.gen | Protein | 1e-43 | 45 |
| CHY_1413 | YP_360245.1 | DNA-binding response regulator | NC_005054.2598277.p0 | Protein | 1e-43 | 45 |
| CHY_1413 | YP_360245.1 | DNA-binding response regulator | NC_007622.3794948.p0 | Protein | 3e-36 | 44 |
| CHY_1413 | YP_360245.1 | DNA-binding response regulator | NC_003923.1003417.p0 | Protein | 3e-36 | 44 |
| CHY_1413 | YP_360245.1 | DNA-binding response regulator | NC_013450.8614146.p0 | Protein | 3e-36 | 44 |
| CHY_1413 | YP_360245.1 | DNA-binding response regulator | NC_002951.3238224.p0 | Protein | 3e-36 | 44 |
| CHY_1413 | YP_360245.1 | DNA-binding response regulator | NC_007793.3914065.p0 | Protein | 3e-36 | 44 |
| CHY_1413 | YP_360245.1 | DNA-binding response regulator | NC_002758.1121390.p0 | Protein | 3e-36 | 44 |
| CHY_1413 | YP_360245.1 | DNA-binding response regulator | NC_010079.5776364.p0 | Protein | 3e-36 | 44 |
| CHY_1413 | YP_360245.1 | DNA-binding response regulator | NC_002952.2859858.p0 | Protein | 3e-36 | 44 |
| CHY_1413 | YP_360245.1 | DNA-binding response regulator | AE015929.1.gene1106. | Protein | 6e-33 | 44 |
| CHY_1413 | YP_360245.1 | DNA-binding response regulator | AF155139.2.orf0.gene | Protein | 5e-42 | 44 |
| CHY_1413 | YP_360245.1 | DNA-binding response regulator | BAC0596 | Protein | 5e-36 | 44 |
| CHY_1413 | YP_360245.1 | DNA-binding response regulator | CP001138.1.gene2239. | Protein | 5e-36 | 44 |
| CHY_1413 | YP_360245.1 | DNA-binding response regulator | CP000034.1.gene2186. | Protein | 5e-36 | 44 |
| CHY_1413 | YP_360245.1 | DNA-binding response regulator | NC_002695.1.916589.p | Protein | 4e-36 | 44 |
| CHY_1413 | YP_360245.1 | DNA-binding response regulator | BAC0039 | Protein | 5e-36 | 44 |
| CHY_1413 | YP_360245.1 | DNA-binding response regulator | NC_010400.5986590.p0 | Protein | 4e-36 | 43 |
| CHY_1413 | YP_360245.1 | DNA-binding response regulator | NC_010410.6002989.p0 | Protein | 8e-37 | 43 |
| CHY_1413 | YP_360245.1 | DNA-binding response regulator | NC_011595.7057856.p0 | Protein | 8e-37 | 43 |
| CHY_1413 | YP_360245.1 | DNA-binding response regulator | AE016830.1.gene1681. | Protein | 6e-46 | 43 |
| CHY_1413 | YP_360245.1 | DNA-binding response regulator | AF130997.1.orf0.gene | Protein | 2e-41 | 43 |
| CHY_1413 | YP_360245.1 | DNA-binding response regulator | CP001918.1.gene5135. | Protein | 4e-27 | 43 |
| CHY_1413 | YP_360245.1 | DNA-binding response regulator | CP001918.1.gene3444. | Protein | 1e-35 | 43 |
| CHY_1413 | YP_360245.1 | DNA-binding response regulator | CP000647.1.gene2531. | Protein | 7e-36 | 43 |
| CHY_1413 | YP_360245.1 | DNA-binding response regulator | AE000516.2.gene3505. | Protein | 4e-38 | 43 |
| CHY_1413 | YP_360245.1 | DNA-binding response regulator | AF310956.2.orf0.gene | Protein | 1e-40 | 42 |
| CHY_1413 | YP_360245.1 | DNA-binding response regulator | CP000675.2.gene1535. | Protein | 2e-40 | 42 |
| CHY_1413 | YP_360245.1 | DNA-binding response regulator | CP001485.1.gene721.p | Protein | 3e-34 | 42 |
| CHY_1413 | YP_360245.1 | DNA-binding response regulator | CP004022.1.gene3215. | Protein | 3e-35 | 42 |
| CHY_1413 | YP_360245.1 | DNA-binding response regulator | CP001138.1.gene4273. | Protein | 2e-31 | 42 |
| CHY_1413 | YP_360245.1 | DNA-binding response regulator | BAC0533 | Protein | 1e-31 | 42 |
| CHY_1413 | YP_360245.1 | DNA-binding response regulator | CP000647.1.gene4257. | Protein | 1e-31 | 42 |
| CHY_1413 | YP_360245.1 | DNA-binding response regulator | AE016830.1.gene2255. | Protein | 2e-39 | 41 |
| CHY_1413 | YP_360245.1 | DNA-binding response regulator | U35369.1.gene1.p01 | Protein | 2e-39 | 41 |
| CHY_1413 | YP_360245.1 | DNA-binding response regulator | CP000034.1.gene3834. | Protein | 1e-30 | 41 |
| CHY_1413 | YP_360245.1 | DNA-binding response regulator | NC_002695.1.915041.p | Protein | 1e-30 | 41 |
| CHY_1413 | YP_360245.1 | DNA-binding response regulator | CP004022.1.gene1676. | Protein | 1e-35 | 41 |
| CHY_1413 | YP_360245.1 | DNA-binding response regulator | CP000034.1.gene3671. | Protein | 2e-39 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| CHY_1413 | YP_360245.1 | DNA-binding response regulator | VFG1563 | Protein | 7e-43 | 45 |
| CHY_1413 | YP_360245.1 | DNA-binding response regulator | VFG1702 | Protein | 2e-42 | 44 |
| CHY_1413 | YP_360245.1 | DNA-binding response regulator | VFG1389 | Protein | 5e-33 | 44 |
| CHY_1413 | YP_360245.1 | DNA-binding response regulator | VFG1386 | Protein | 8e-34 | 42 |
